X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=ChangeLog;h=32f99c176f5c57989b540425499eea13c3700a6b;hb=8fa54a671f763f10f68bfe660b6a5949123d3d41;hp=72198d9dd284170c46251cf6ad8274c7ba1adcf2;hpb=0e3fb192a3bd90922b5a41bae0a26505dc78550e;p=ape.git

diff --git a/ChangeLog b/ChangeLog
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+++ b/ChangeLog
@@ -1,3 +1,42 @@
+		CHANGES IN APE VERSION 2.6-4
+
+
+NEW FEATURES
+
+    o There is a new image() method for "DNAbin" objects: it plots DNA
+      alignments in a flexible and efficient way.
+
+    o base.freq() gains an option 'all' to count all the possible bases
+      including the ambiguous ones (defaults to FALSE).
+
+    o read.nexus() now writes tree names in the NEXUS file if given a list
+      of trees with names.
+
+
+BUG FIXES
+
+    o prop.part() failed in some situations with unrooted trees.
+
+    o read.nexus() shuffled node labels when a TRANSLATE block was
+      present.
+
+    o varCompPhylip() did not work if 'exec' was specified.
+
+    o bind.tree() shuffled node labels when position > 0 and 'where'
+      was not the root.
+
+
+OTHER CHANGES
+
+    o BaseProportion in src/dist_dna.c has been modified.
+
+    o A number of functions in src/tree_build.c have been modified.
+
+    o The matching representation has now only two columns as the third
+      column was redundant.
+
+
+
 		CHANGES IN APE VERSION 2.6-3