X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=BamReader.h;h=0b13786b1b112a48cccae944ac73f14c4f7e6e53;hb=5e3a115ed6c8bd643d59f0a8fa82201d6d733a47;hp=88cc74a25d3cfd04ab90e7957dbfe808b313121e;hpb=5ca1303304066dbb42207d79c6d1703377908e0b;p=bamtools.git diff --git a/BamReader.h b/BamReader.h index 88cc74a..0b13786 100644 --- a/BamReader.h +++ b/BamReader.h @@ -51,11 +51,12 @@ class BamReader { // retrieves next available alignment (returns success/fail) bool GetNextAlignment(BamAlignment& bAlignment); + // retrieves next available alignment core data (returns success/fail) // ** DOES NOT parse any character data (bases, qualities, tag data) // these can be accessed, if necessary, from the supportData // useful for operations requiring ONLY positional or other alignment-related information - bool GetNextAlignmentCore(BamAlignment& bAlignment, BamAlignmentSupportData& supportData); + bool GetNextAlignmentCore(BamAlignment& bAlignment); // ---------------------- // access auxiliary data