X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=validparameter.cpp;h=e97df8b0fc8e0efc9f02f6c61987f59ea1c75b89;hb=d5d2761f88b41f1006d0b700e0ab51e2ce48b875;hp=3e6a9799353a78e4e87a7cd72ebc4d78a7199aa5;hpb=3117b1c3109121dff476997d3c5db5b47a77729b;p=mothur.git

diff --git a/validparameter.cpp b/validparameter.cpp
index 3e6a979..e97df8b 100644
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -220,9 +220,6 @@ void ValidParameters::initCommandParameters() {
 		string readtreeArray[] = {"tree","group"};
 		commandParameters["read.tree"] = addParameters(readtreeArray, sizeof(readtreeArray)/sizeof(string));
 		
-		string readseqsArray[] = {"fasta","phylip","clustal","nexus","line"};
-		commandParameters["read.seqs"] = addParameters(readseqsArray, sizeof(readseqsArray)/sizeof(string));
-		
 		string clusterArray[] =  {"cutoff","precision","method"};
 		commandParameters["cluster"] = addParameters(clusterArray, sizeof(clusterArray)/sizeof(string));
 		
@@ -271,7 +268,7 @@ void ValidParameters::initCommandParameters() {
 		string heatmapArray[] =  {"groups","line","label","sorted","scale"};
 		commandParameters["heatmap"] = addParameters(heatmapArray, sizeof(heatmapArray)/sizeof(string));
 		
-		string filterseqsArray[] =  {"trump", "soft", "filter"};
+		string filterseqsArray[] =  {"fasta","phylip","clustal","nexus", "trump", "soft", "filter"};
 		commandParameters["filter.seqs"] = addParameters(filterseqsArray, sizeof(filterseqsArray)/sizeof(string));
 
 		string vennArray[] =  {"groups","line","label","calc"};
@@ -292,7 +289,7 @@ void ValidParameters::initCommandParameters() {
 		string concensusArray[] =  {};
 		commandParameters["concensus"] = addParameters(concensusArray, sizeof(concensusArray)/sizeof(string));
 		
-		string distanceArray[] =  {"calc", "ends", "cutoff", "processors"};
+		string distanceArray[] =  {"fasta","phylip","clustal","nexus", "calc", "ends", "cutoff", "processors"};
 		commandParameters["distance"] = addParameters(distanceArray, sizeof(distanceArray)/sizeof(string));
 		
 		string quitArray[] = {};