X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=unifracweightedcommand.h;h=9deef732bfe100e27b99fb2e30551de0256e453e;hb=3c5c4e255ee8c36feb9e97aebc4e792e6ff8c440;hp=1b8b12bf789da9892a78017e7f888e0ad54ace01;hpb=0190105145fbd3e02da8f23cb50841229e5d696f;p=mothur.git diff --git a/unifracweightedcommand.h b/unifracweightedcommand.h index 1b8b12b..9deef73 100644 --- a/unifracweightedcommand.h +++ b/unifracweightedcommand.h @@ -34,7 +34,7 @@ class UnifracWeightedCommand : public Command { Tree* randT; //random tree TreeMap* tmap; Weighted* weighted; - string weightedFile, sumFile, distFile; + string weightedFile, sumFile; int iters, numGroups, numComp; EstOutput userData; //weighted score info for user tree EstOutput randomData; //weighted score info for random trees @@ -47,11 +47,12 @@ class UnifracWeightedCommand : public Command { map::iterator it; map::iterator it2; - ofstream outSum, outDist, out; + ofstream outSum, out; void printWSummaryFile(); void printWeightedFile(); - void saveRandomScores(); + void saveRandomScores(); + void setGroups(); };