X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=summaryqualcommand.cpp;fp=summaryqualcommand.cpp;h=2a40e0862ba0b0444db035246cdcb95409fe4923;hb=16abd6271c455bd01b34ff89a2e3641bef0fa128;hp=421a8f2ad36c64e218aa68a4eb6fd8dc651362d0;hpb=896a4f281982a3c2889f6ce6d73be997072aceae;p=mothur.git

diff --git a/summaryqualcommand.cpp b/summaryqualcommand.cpp
index 421a8f2..2a40e08 100644
--- a/summaryqualcommand.cpp
+++ b/summaryqualcommand.cpp
@@ -111,7 +111,7 @@ SummaryQualCommand::SummaryQualCommand(string option)  {
 			
 			//check for required parameters
 			qualfile = validParameter.validFile(parameters, "qfile", true);
-			if (qualfile == "not open") { abort = true; }
+			if (qualfile == "not open") { qualfile = ""; abort = true; }
 			else if (qualfile == "not found") { 				
 				qualfile = m->getQualFile(); 
 				if (qualfile != "") { m->mothurOut("Using " + qualfile + " as input file for the qfile parameter."); m->mothurOutEndLine(); }
@@ -131,7 +131,12 @@ SummaryQualCommand::SummaryQualCommand(string option)  {
 			
 			string temp = validParameter.validFile(parameters, "processors", false);	if (temp == "not found"){	temp = m->getProcessors();	}
 			m->setProcessors(temp);
-			m->mothurConvert(temp, processors);			
+			m->mothurConvert(temp, processors);	
+			
+			if (namefile == "") {
+				vector<string> files; files.push_back(qualfile);
+				parser.getNameFile(files);
+			}
 		}
 	}
 	catch(exception& e) {