X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=splitmatrix.h;h=e38f8fc1ba7afd679a7cc308547e2e0f0c11a545;hb=47faf5463d44570ad66148384763db1c8238b563;hp=5974ff1b967a5b3313bea6dcbcf967eb4b1c5023;hpb=44b464979e91c2a1f144ac45ca12c14fcf6579f0;p=mothur.git

diff --git a/splitmatrix.h b/splitmatrix.h
index 5974ff1..e38f8fc 100644
--- a/splitmatrix.h
+++ b/splitmatrix.h
@@ -19,18 +19,21 @@ class SplitMatrix  {
 	
 	public:
 
-		SplitMatrix(string, string, float); //column formatted distance file, namesfile, cutoff
+		SplitMatrix(string, string, string, float, string); //column formatted distance file, namesfile, cutoff, method
 		~SplitMatrix();
 		int split();
 		vector< map<string, string> > getDistanceFiles();  //returns map of distance files -> namefile sorted by distance file size
 		string getSingletonNames() { return singleton; } //returns namesfile containing singletons
 	
 	private:
-		string distFile, namefile, singleton;
+		MothurOut* m;
+
+		string distFile, namefile, singleton, method, taxFile;
 		vector< map< string, string> > dists;
 		float cutoff;
-		
-		MothurOut* m;
+				
+		int splitDistance();
+		int splitClassify();
 };
 
 /******************************************************/