X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=slayer.cpp;fp=slayer.cpp;h=88f9c1c63a80217d548ea7f7ba561df7027ba6a7;hb=3914e7db89b35c97e4075271d4849567d6cca5f7;hp=c4e199febb64b0b38e683bc41c7863c61bc9ba31;hpb=173f0a0a7dbfafd3324da31c627fc7d010d3db2d;p=mothur.git

diff --git a/slayer.cpp b/slayer.cpp
index c4e199f..88f9c1c 100644
--- a/slayer.cpp
+++ b/slayer.cpp
@@ -66,7 +66,7 @@ string Slayer::getResults(Sequence* query, vector<Sequence*> refSeqs) {
 						
 						
 						//are we within 10 points of the bootstrap cutoff?
-						if (divs[k].bsMax >= (minBS-10)) {
+						if ((divs[k].bsMax >= (minBS-10)) && (iters < 1000)) {
 							snpsLeft = getSNPS(divs[k].parentA.getAligned(), divs[k].querySeq.getAligned(), divs[k].parentB.getAligned(), divs[k].winLStart, divs[k].winLEnd);
 							snpsRight = getSNPS(divs[k].parentA.getAligned(), divs[k].querySeq.getAligned(), divs[k].parentB.getAligned(), divs[k].winRStart, divs[k].winREnd);