X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=sharedsobscollectsummary.cpp;fp=sharedsobscollectsummary.cpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=fffed0290b1136da46e42d31c99542da19ec9a0a;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/sharedsobscollectsummary.cpp b/sharedsobscollectsummary.cpp
deleted file mode 100644
index fffed02..0000000
--- a/sharedsobscollectsummary.cpp
+++ /dev/null
@@ -1,42 +0,0 @@
-/*
- *  sharedsobscollectsummary.cpp
- *  Mothur
- *
- *  Created by Sarah Westcott on 2/12/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "sharedsobscollectsummary.h"
-
-/***********************************************************************/
-//This returns the number of shared species observed in several groups.  
-//The shared vector is each groups sharedrabundvector.
-
-EstOutput SharedSobsCS::getValues(vector<SharedRAbundVector*> shared){
-	try {
-		data.resize(1,0);
-		double observed = 0;
-		int numGroups = shared.size();
-
-		for (int i = 0; i < shared[0]->getNumBins(); i++) {
-			//get bin values and set sharedByAll 
-			bool sharedByAll = true;
-			for (int j = 0; j < numGroups; j++) {
-				if (shared[j]->getAbundance(i) == 0) { sharedByAll = false; }
-			}
-			
-			//they are shared
-			if (sharedByAll == true) {  observed++;  }
-		}
-
-		data[0] = observed;
-		return data;
-	}
-	catch(exception& e) {
-		m->errorOut(e, "SharedSobsCS", "getValues");
-		exit(1);
-	}
-}
-
-/***********************************************************************/