X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=sharedcommand.h;h=3467c7b1d9e6beb1bcd2b5af9a63f9d9bbaf8045;hb=29c0d3ec01be5372807eb86261100d77de253787;hp=ca0ddd833636e6550cb48832517cdc96f912977e;hpb=301b61cb98aaa4641f8701f43cf830c0fa44fac1;p=mothur.git

diff --git a/sharedcommand.h b/sharedcommand.h
index ca0ddd8..3467c7b 100644
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -37,11 +37,12 @@ private:
 	ReadOTUFile* read;
 	SharedListVector* SharedList;
 	InputData* input;
-	//map<string, SharedRAbundVector*>::iterator it;
-	//vector<SharedRAbundVector*> lookup;
+	GroupMap* groupMap;
 	ofstream out;
-	string filename;
+	string filename, fileroot;
 	bool firsttime;
+	map<string, ofstream*> filehandles;
+	map<string, ofstream*>::iterator it3;
 
 };