X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=removeseqscommand.h;fp=removeseqscommand.h;h=434983e8e4c5909be8a083cf8251cee34b0d27ce;hb=c53c53b0280452e1c3a087fbf807b2e508cd66c4;hp=0000000000000000000000000000000000000000;hpb=b9456b1087ade74251792e039f4e5021dbf32349;p=mothur.git

diff --git a/removeseqscommand.h b/removeseqscommand.h
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+++ b/removeseqscommand.h
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+#ifndef REMOVESEQSCOMMAND_H
+#define REMOVESEQSCOMMAND_H
+
+/*
+ *  removeseqscommand.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 7/8/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+ 
+#include "command.hpp"
+
+class RemoveSeqsCommand : public Command {
+	
+	public:
+	
+		RemoveSeqsCommand(string);	
+		~RemoveSeqsCommand(){};
+		int execute();
+		void help();	
+		
+	private:
+		set<string> names;
+		string accnosfile, fastafile, namefile, groupfile, alignfile;
+		bool abort;
+		
+		void readFasta();
+		void readName();
+		void readGroup();
+		void readAlign();
+		void readAccnos();
+		
+};
+
+#endif
+