X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=removerarecommand.cpp;fp=removerarecommand.cpp;h=2eb5f63da369828e4e67e0f0b262b1e786b75a88;hb=a935b75dd890da5ae7f09e5e6179f90ab2955348;hp=a551681fb6721e4b3670fe912e1b6bfe909dd388;hpb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;p=mothur.git

diff --git a/removerarecommand.cpp b/removerarecommand.cpp
index a551681..2eb5f63 100644
--- a/removerarecommand.cpp
+++ b/removerarecommand.cpp
@@ -411,7 +411,7 @@ int RemoveRareCommand::processList(){
 			util.setGroups(Groups, namesGroups);
 			m->openOutputFile(outputGroupFileName, outGroup);
 		}else if (countfile != "") {
-            ct.readTable(countfile, true);
+            ct.readTable(countfile, true, false);
             if (ct.hasGroupInfo()) {
                 vector<string> namesGroups = ct.getNamesOfGroups();
                 SharedUtil util;