X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=rarefactsharedcommand.cpp;fp=rarefactsharedcommand.cpp;h=717fec2fea1fc1ba23564fc683149e38d177496e;hb=7bf9a81bba76538ecaf351ae208de3da4bf1b6dd;hp=fe92f97038eea51cd87a05608bad0e2525070c58;hpb=220dc345e493cddc569521111ce32ac4d965ab7f;p=mothur.git

diff --git a/rarefactsharedcommand.cpp b/rarefactsharedcommand.cpp
index fe92f97..717fec2 100644
--- a/rarefactsharedcommand.cpp
+++ b/rarefactsharedcommand.cpp
@@ -124,7 +124,7 @@ RareFactSharedCommand::RareFactSharedCommand(string option)  {
 				sharedfile = m->getSharedFile(); 
 				if (sharedfile != "") { m->mothurOut("Using " + sharedfile + " as input file for the shared parameter."); m->mothurOutEndLine(); }
 				else { 	m->mothurOut("You have no current sharedfile and the shared parameter is required."); m->mothurOutEndLine(); abort = true; }
-			}
+			}else { m->setSharedFile(sharedfile); }
 			
 			
 			//if the user changes the output directory command factory will send this info to us in the output parameter