X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=quitcommand.cpp;fp=quitcommand.cpp;h=462fe8fbf43e7f47a93ddefeb1058095cf636f86;hb=c69e2e9749626cfbf1d6cb0125ae94f869e00b18;hp=0dd2dec189317e56518fbfafce1c93a3c7a84f1b;hpb=c887ae6cd9f1c5b6e1b73a1384f154392be4efa3;p=mothur.git

diff --git a/quitcommand.cpp b/quitcommand.cpp
index 0dd2dec..462fe8f 100644
--- a/quitcommand.cpp
+++ b/quitcommand.cpp
@@ -45,10 +45,10 @@ vector<string> QuitCommand::getRequiredFiles(){
 //**********************************************************************************************************************
 
 QuitCommand::QuitCommand(string option) {
-		abort = false;
+		abort = false; calledHelp = false;   
 		
 		//allow user to run help
-		if(option == "help") { help(); abort = true; }
+		if(option == "help") { help(); abort = true; calledHelp = true; }
 
 }
 //**********************************************************************************************************************