X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=parsimonycommand.cpp;h=6ffb30b3caf18a695604c69c5556b2b7c5c2b50a;hb=c99f3846e7a7b6f06ab46508baa5409204ad6290;hp=6df2debe877bc0d594949ad3f62249f3912f76eb;hpb=510b1cfc25cd79391d6973ca20c5ec25fb1bb3b2;p=mothur.git

diff --git a/parsimonycommand.cpp b/parsimonycommand.cpp
index 6df2deb..6ffb30b 100644
--- a/parsimonycommand.cpp
+++ b/parsimonycommand.cpp
@@ -45,7 +45,7 @@ ParsimonyCommand::ParsimonyCommand(string option) {
 			//check for optional parameter and set defaults
 			// ...at some point should added some additional type checking...
 			groups = validParameter.validFile(parameters, "groups", false);			
-			if (groups == "not found") { groups = ""; }
+			if (groups == "not found") { groups = ""; globaldata->Groups.clear(); }
 			else { 
 				splitAtDash(groups, Groups);
 				globaldata->Groups = Groups;
@@ -71,7 +71,7 @@ ParsimonyCommand::ParsimonyCommand(string option) {
 				
 				//set users groups to analyze
 				util = new SharedUtil();
-				util->setGroups(globaldata->Groups, tmap->namesOfGroups, allGroups, numGroups, "unweighted");	//sets the groups the user wants to analyze
+				util->setGroups(globaldata->Groups, tmap->namesOfGroups, allGroups, numGroups, "parsimony");	//sets the groups the user wants to analyze
 				util->getCombos(groupComb, globaldata->Groups, numComp);
 				
 				if (numGroups == 1) { numComp++; groupComb.push_back(allGroups); }