X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=mothurout.h;h=0e31f8414a3a3477c1d8ab928d79aee0ccdc9957;hb=8e3e7b1e124f45cb1f2ca9d764ff67fa9b2e532b;hp=9ce698be4e1963e6af9abee67673ded3e1743fde;hpb=d2390ede25cc211f95f99e377d5654bad7e6950e;p=mothur.git

diff --git a/mothurout.h b/mothurout.h
index 9ce698b..0e31f84 100644
--- a/mothurout.h
+++ b/mothurout.h
@@ -130,6 +130,7 @@ class MothurOut {
 		void splitAtChar(string&, vector<string>&, char);
         void splitAtChar(string&, string&, char);
 		int removeConfidences(string&);
+        string makeList(vector<string>&);
 		
 		//math operation
 		int factorial(int num);
@@ -140,7 +141,7 @@ class MothurOut {
 		int getRandomIndex(int); //highest
 
 		int control_pressed;
-		bool executing, runParse, jumble, gui, mothurCalling;
+		bool executing, runParse, jumble, gui, mothurCalling, debug;
 		
 		//current files - if you add a new type you must edit optionParser->getParameters, get.current command and mothurOut->printCurrentFiles/clearCurrentFiles.
 		string getPhylipFile()		{ return phylipfile;		}
@@ -225,6 +226,7 @@ class MothurOut {
 			printedHeaders = false;
 			commandInputsConvertError = false;
             mothurCalling = false;
+            debug = false;
 			sharedHeaderMode = "";
 		}
 		~MothurOut();