X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=listseqscommand.h;fp=listseqscommand.h;h=4e0febd9c6dc84a7b49589e614c076493638c913;hb=861f46b74c17adec8c6ad6d89f232ae7485797bf;hp=0000000000000000000000000000000000000000;hpb=6e63c5ff52bd2830b689417df8ba3db831e63a96;p=mothur.git

diff --git a/listseqscommand.h b/listseqscommand.h
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+++ b/listseqscommand.h
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+#ifndef LISTSEQSCOMMAND_H
+#define LISTSEQSCOMMAND_H
+
+/*
+ *  listseqscommand.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 7/8/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "command.hpp"
+
+class ListSeqsCommand : public Command {
+	
+	public:
+	
+		ListSeqsCommand(string);	
+		~ListSeqsCommand(){};
+		int execute();
+		void help();	
+		
+	private:
+		vector<string> names;
+		string fastafile, namefile, groupfile, alignfile, inputFileName;
+		bool abort;
+		
+		void readFasta();
+		void readName();
+		void readGroup();
+		void readAlign();
+		
+};
+
+#endif
+