X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=kmer.hpp;h=9a3c5a0091b868b7f61ae8043546f39b27e212cb;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hp=21a18e3ab801a9c07a3aa18f5a16e0481f65eb6b;hpb=c5c7502f435e1413c19e373dab1dfebcaa67588d;p=mothur.git

diff --git a/kmer.hpp b/kmer.hpp
index 21a18e3..9a3c5a0 100644
--- a/kmer.hpp
+++ b/kmer.hpp
@@ -20,11 +20,11 @@ public:
 	Kmer(int);
 	string getKmerString(string);
 	int getKmerNumber(string, int);
-	
-	
-private:
 	string getKmerBases(int);
+	int getReverseKmerNumber(int);
+	vector< map<int, int> > getKmerCounts(string sequence);  //for use in chimeraCheck
 	
+private:
 	char getASCII(int);
 	int getNumber(char);
 	int kmerSize;
@@ -34,4 +34,5 @@ private:
 
 /**************************************************************************************************/
 
+
 #endif