X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=kaln.c;h=9fa40d0be3999e66b885486d7a03e50994bfbfdd;hb=d0e30eec1158752010659982342a611fc91ae8e3;hp=015030eca4a3e22cde12031c5ffb354f4447aaf3;hpb=bb9a8233e309f483c565dac4cb7193decdf324a5;p=samtools.git

diff --git a/kaln.c b/kaln.c
index 015030e..9fa40d0 100644
--- a/kaln.c
+++ b/kaln.c
@@ -182,17 +182,6 @@ typedef struct {
 	int M, I, D;
 } dpscore_t;
 
-/* build score profile for accelerating alignment, in theory */
-static void aln_init_score_array(uint8_t *seq, int len, int row, int *score_matrix, int **s_array)
-{
-	int *tmp, *tmp2, i, k;
-	for (i = 0; i != row; ++i) {
-		tmp = score_matrix + i * row;
-		tmp2 = s_array[i];
-		for (k = 0; k != len; ++k)
-			tmp2[k] = tmp[seq[k]];
-	}
-}
 /***************************
  * banded global alignment *
  ***************************/