X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=getrabundcommand.cpp;h=60f4ece3eb13de6fc68f6141c3e28ca283da694b;hb=191ae1be0679d5cf4eda950b3b1bf26fb7dd503d;hp=a38aeb30dea60a2fe67984fa05dc83b6fb9130e1;hpb=fc9bc621a09de13eb76ca4f5cee930b03de43dcd;p=mothur.git

diff --git a/getrabundcommand.cpp b/getrabundcommand.cpp
index a38aeb3..60f4ece 100644
--- a/getrabundcommand.cpp
+++ b/getrabundcommand.cpp
@@ -24,6 +24,7 @@ vector<string> GetRAbundCommand::getValidParameters(){
 //**********************************************************************************************************************
 GetRAbundCommand::GetRAbundCommand(){	
 	try {
+		abort = true;
 		//initialize outputTypes
 		vector<string> tempOutNames;
 		outputTypes["rabund"] = tempOutNames;