X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=fullmatrix.h;h=0ab1d7175dce3b9bdef4758b83dffc26ace8079b;hb=3659285c05daa94306a7b61dd97ec945b23d472b;hp=f3ad0e73dfb2615e4fbeb5bbd96f1a025c6a0ae6;hpb=9651e8e7172d86707b34af15e95ec60ad4c3c3f9;p=mothur.git

diff --git a/fullmatrix.h b/fullmatrix.h
index f3ad0e7..0ab1d71 100644
--- a/fullmatrix.h
+++ b/fullmatrix.h
@@ -16,6 +16,12 @@
 
 using namespace std;
 
+struct Names {
+	string	groupname;
+	string		seqName;
+};
+
+
 class FullMatrix {
 	
 	public:
@@ -27,12 +33,11 @@ class FullMatrix {
 		void printMatrix(ostream&);
 	
 	private:
-		void sortGroups();  //this function sorts the sequences within the matrix.
-		void quicksort(int, int, int);//row of matrix, low, high and row number
+		void sortGroups(int, int);  //this function sorts the sequences within the matrix.
 		void readSquareMatrix(ifstream&);  
 		void readLTMatrix(ifstream&);
 		vector< vector<float> > matrix;  //a 2D distance matrix of all the sequences and their distances to eachother.
-		map<int, string> index; // row in vector, sequence group.  need to know this so when we sort it can be updated.
+		map<int, Names> index; // row in vector, sequence group.  need to know this so when we sort it can be updated.
 		GroupMap* groupmap;  //maps sequences to groups they belong to.
 		GlobalData* globaldata;
 		int numSeqs;