X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=filterseqscommand.cpp;h=fada19aeba83054f7d41b42d2827147e86215414;hb=956cdff34f2d609a7736838b1631cd7957580b8b;hp=33790fe97632525cbb6c155ab953da531f770078;hpb=37309a2552995e5f7f2e04be99b808c803472311;p=mothur.git

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 33790fe..fada19a 100644
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -872,7 +872,7 @@ int FilterSeqsCommand::createProcessesCreateFilter(Filters& F, string filename)
 int FilterSeqsCommand::setLines(string filename) {
 	try {
 		
-		vector<long int> positions;
+		vector<unsigned long int> positions;
 		bufferSizes.clear();
 		
 		ifstream inFASTA;
@@ -883,7 +883,7 @@ int FilterSeqsCommand::setLines(string filename) {
 			input = getline(inFASTA);
 
 			if (input.length() != 0) {
-				if(input[0] == '>'){ long int pos = inFASTA.tellg(); positions.push_back(pos - input.length() - 1);	}
+				if(input[0] == '>'){ unsigned long int pos = inFASTA.tellg(); positions.push_back(pos - input.length() - 1);	}
 			}
 		}
 		inFASTA.close();
@@ -891,7 +891,7 @@ int FilterSeqsCommand::setLines(string filename) {
 		int numFastaSeqs = positions.size();
 	
 		FILE * pFile;
-		long size;
+		unsigned long int size;
 		
 		//get num bytes in file
 		pFile = fopen (filename.c_str(),"rb");
@@ -908,12 +908,12 @@ int FilterSeqsCommand::setLines(string filename) {
 		
 		for (int i = 0; i < processors; i++) {
 
-			long int startPos = positions[ i * numSeqsPerProcessor ];
+			unsigned long int startPos = positions[ i * numSeqsPerProcessor ];
 			if(i == processors - 1){
 				numSeqsPerProcessor = numFastaSeqs - i * numSeqsPerProcessor;
 				bufferSizes.push_back(size - startPos);
 			}else{  
-				long int myEnd = positions[ (i+1) * numSeqsPerProcessor ];
+				unsigned long int myEnd = positions[ (i+1) * numSeqsPerProcessor ];
 				bufferSizes.push_back(myEnd-startPos);
 			}
 			lines.push_back(new linePair(startPos, numSeqsPerProcessor));