X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=distancecommand.h;h=36a1e24b0986bb24a106fb3b72f6cba17f1acfce;hb=83b5acbe3d6087a6cd73e80dde4b923387a01d01;hp=f825cfbf343455b9ba5ef4bfb89836df8775cebe;hpb=050220fe7822cc660615972a0054cf4a83eefbe4;p=mothur.git

diff --git a/distancecommand.h b/distancecommand.h
index f825cfb..36a1e24 100644
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -34,8 +34,8 @@ private:
 	Dist* distCalculator;
 	SequenceDB alignDB;
 
-	string countends, output, fastafile, calc, outputDir;
-	int processors;
+	string countends, output, fastafile, calc, outputDir, oldfastafile, column;
+	int processors, numNewFasta;
 	float cutoff;
 	map<int, int> processIDS;   //end line, processid
 	vector<linePair*> lines;
@@ -53,6 +53,7 @@ private:
 	#endif
 	
 	int convertMatrix(string);
+	bool sanityCheck();
 	int convertToLowerTriangle(string);
 
 };