X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=dist.h;fp=dist.h;h=1412424b8da755dbe6a35f2a7d14ae37c36929e5;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/dist.h b/dist.h
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+++ b/dist.h
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+#ifndef DIST_H
+#define DIST_H
+/*
+ *  dist.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 5/7/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "mothur.h"
+#include "sequence.hpp"
+
+/**************************************************************************************************/
+
+class Dist {
+	
+public:
+	Dist(){ dist = 0; m = MothurOut::getInstance(); }
+	Dist(const Dist& d) : dist(d.dist) { m = MothurOut::getInstance(); }
+	virtual ~Dist() {}
+	virtual void calcDist(Sequence, Sequence) = 0;
+	double getDist()	{	return dist;	}
+
+protected:
+	double dist;
+	MothurOut* m;
+};
+
+/**************************************************************************************************/
+
+#endif