X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=deuniquetreecommand.h;fp=deuniquetreecommand.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=18a6e5e95491603f051b847467db80512d3ad517;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/deuniquetreecommand.h b/deuniquetreecommand.h
deleted file mode 100644
index 18a6e5e..0000000
--- a/deuniquetreecommand.h
+++ /dev/null
@@ -1,46 +0,0 @@
-#ifndef DEUNIQUETREECOMMAND_H
-#define DEUNIQUETREECOMMAND_H
-
-/*
- *  deuniquetreecommand.h
- *  Mothur
- *
- *  Created by westcott on 5/27/11.
- *  Copyright 2011 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-#include "sharedutilities.h"
-#include "readtree.h"
-
-class DeuniqueTreeCommand : public Command {
-	
-public:
-	DeuniqueTreeCommand(string);	
-	DeuniqueTreeCommand();
-	~DeuniqueTreeCommand() {}
-	
-	vector<string> setParameters();
-	string getCommandName()			{ return "deunique.tree";		}
-	string getCommandCategory()		{ return "Hypothesis Testing";		}
-	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Deunique.tree"; }
-	string getDescription()		{ return "add the redundant sequence names back into a tree of unique sequences"; }
-	
-	int execute();
-	void help() { m->mothurOut(getHelpString()); }
-	
-	
-private:
-	int numUniquesInName;
-	
-	bool abort;
-	string outputDir, treefile, namefile;
-	vector<string> outputNames;
-	map<string, string> nameMap;
-	int readNamesFile();
-};
-
-#endif