X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=corraxescommand.cpp;h=cd188b8a921a33aaac255852b5ab22d6008f605e;hb=220dc345e493cddc569521111ce32ac4d965ab7f;hp=791ec4978fd82d2fb692723fc105dfd5b6c041f0;hpb=23e60689fa4306234b3d05b116f25d198316d1ae;p=mothur.git

diff --git a/corraxescommand.cpp b/corraxescommand.cpp
index 791ec49..cd188b8 100644
--- a/corraxescommand.cpp
+++ b/corraxescommand.cpp
@@ -140,12 +140,12 @@ CorrAxesCommand::CorrAxesCommand(string option)  {
 			sharedfile = validParameter.validFile(parameters, "shared", true);
 			if (sharedfile == "not open") { abort = true; }
 			else if (sharedfile == "not found") { sharedfile = ""; }
-			else { inputFileName = sharedfile; }
+			else { inputFileName = sharedfile; m->setSharedFile(sharedfile); }
 			
 			relabundfile = validParameter.validFile(parameters, "relabund", true);
 			if (relabundfile == "not open") { abort = true; }
 			else if (relabundfile == "not found") { relabundfile = ""; }
-			else { inputFileName = relabundfile; }
+			else { inputFileName = relabundfile; m->setRelAbundFile(relabundfile); }
 			
 			metadatafile = validParameter.validFile(parameters, "metadata", true);
 			if (metadatafile == "not open") { abort = true; }