X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=collectcommand.h;h=1d8734fa5d713ad4535e067af55d3c56d699573c;hb=01f8d2c7d982a6209211f5abbcf2a086fdf60d0a;hp=1884d04fb2719f088fa5b54475b4c70534f114e1;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/collectcommand.h b/collectcommand.h
index 1884d04..1d8734f 100644
--- a/collectcommand.h
+++ b/collectcommand.h
@@ -37,7 +37,10 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "collect.single";			}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getCitation() { return "Schloss PD, Handelsman J (2006). Introducing SONS, A tool that compares the membership of microbial communities. Appl Environ Microbiol 72: 6773-9. \nhttp://www.mothur.org/wiki/Collect.single"; }
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
+	string getDescription()		{ return "generates collector's curves using calculators, that describe the richness, diversity, and other features of individual samples"; }
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
@@ -47,7 +50,6 @@ private:
 	OrderVector* order;
 	InputData* input;
 	Collect* cCurve;
-	ValidCalculators* validCalculator;
 	vector<Display*> cDisplays;
 	int abund, size;
 	float freq;