X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=code_ruby%2Flib%2Fmaasha%2Fseq.rb;h=9a8816dc53b47b60e764a98c184a44375dd36bff;hb=164c771704dbc986614e93aed25a6d1fc0e200c7;hp=8231f66659fe17bb29f0f0433b6ace1bd3752dcf;hpb=817ff2f0a4be01f45972e06a3228745d0ee456ca;p=biopieces.git diff --git a/code_ruby/lib/maasha/seq.rb b/code_ruby/lib/maasha/seq.rb index 8231f66..9a8816d 100644 --- a/code_ruby/lib/maasha/seq.rb +++ b/code_ruby/lib/maasha/seq.rb @@ -294,8 +294,8 @@ class Seq raise SeqError, "Missing seq_name" if self.seq_name.nil? or self.seq_name == '' raise SeqError, "Missing seq" if self.seq.nil? or self.seq.empty? - seq_name = self.seq_name.to_s - seq = self.seq.to_s + seq_name = self.seq_name + seq = self.seq.dup unless wrap.nil? seq.gsub!(/(.{#{wrap}})/) do |match| @@ -305,7 +305,7 @@ class Seq seq.chomp! end - ">" + seq_name + $/ + seq + $/ + ">" + seq_name.to_s + $/ + seq + $/ end # Method that given a Seq entry returns a FASTQ entry (a string).