X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=bp_bin%2Fread_sam;h=1da5ff58535aef7be08647dcb7a13942aa99a111;hb=bd0f13cb8323f6026911830d122d06d4cbf78a58;hp=69cbf64e0b792cf5b4749effaa222a46fa3fa9b2;hpb=c54a2cc53ee2a7db8028ef593be593e527dc50c2;p=biopieces.git diff --git a/bp_bin/read_sam b/bp_bin/read_sam index 69cbf64..1da5ff5 100755 --- a/bp_bin/read_sam +++ b/bp_bin/read_sam @@ -45,14 +45,14 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output| output.puts record end - if options.has_key? :data_in + if options[:data_in] options[:data_in].each do |file| - Sam.open(file, mode='r') do |sam| + Sam.open(file, 'r') do |sam| sam.each do |entry| output.puts Sam.to_bp(entry) num += 1 - if options.has_key? :num and options[:num] == num + if options[:num] and options[:num] == num last = true break end