X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=bp_bin%2Fanalyze_bed;h=ea16d8ac4d7f782ce9ef655734aaddcf38e1f9f4;hb=62ccc0892d1ec2497796aa340bf97c663511996f;hp=5895104553c09bb08cc860c203f37aedb8f59506;hpb=9bf550c4335d8860c5f6f9c4db0f385f1b36c1dd;p=biopieces.git diff --git a/bp_bin/analyze_bed b/bp_bin/analyze_bed index 5895104..ea16d8a 100755 --- a/bp_bin/analyze_bed +++ b/bp_bin/analyze_bed @@ -29,7 +29,7 @@ use warnings; use strict; use Maasha::Biopieces; -use Maasha::UCSC; +use Maasha::UCSC::BED; # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< @@ -44,7 +44,7 @@ $out = Maasha::Biopieces::write_stream( $options->{ "stream_out" } ); while ( $record = Maasha::Biopieces::get_record( $in ) ) { - $record = Maasha::UCSC::bed_analyze( $record ) if $record->{ "REC_TYPE" } eq "BED"; + $record = Maasha::UCSC::BED::bed_analyze( $record ) if $record->{ "REC_TYPE" } eq "BED"; Maasha::Biopieces::put_record( $record, $out ); }