X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=bin%2Fget_ncbi_results;h=3e1a6259ce1d2e717727ad7a9ed4a1d1a3bef118;hb=a4b9214b7939fbe990f2373684dfd7aa1f9e77e2;hp=7a869014bc15525ab80f36c0fc02ad50ac94f4eb;hpb=8e1fe04cb712a2231b9a7112b7a701a67f9ddd31;p=function2gene.git

diff --git a/bin/get_ncbi_results b/bin/get_ncbi_results
index 7a86901..3e1a625 100755
--- a/bin/get_ncbi_results
+++ b/bin/get_ncbi_results
@@ -143,6 +143,7 @@ while (<$terms>) {
 
      # Get XML file
      my @current_ids;
+     print {$xml_file} "<opt>\n";
      while (@current_ids = splice(@gene_ids,0,5)) {
 	  $uri = URI->new($options{pubmed_site}.$options{pubmed_get_url});
 	  $uri->query_form($uri->query_form(),
@@ -167,10 +168,10 @@ while (<$terms>) {
 	  $response =~ s/^\s*<pre>//gso;
 	  $response =~ s#</pre>\s*$##gso;
 
-
 	  print {$xml_file} $response;
 	  sleep 10;
      }
+     print {$xml_file} "</opt>\n";
      undef $xml_file;
 }