X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=bam_mcns.h;h=0781975361a732ecf8ec285948832e4458d3e0a4;hb=fb9ec864a4db78d58c5aba13c6c24ce4b610ab57;hp=5c7c42026def5133b2468e882785d756dfaee750;hpb=be667020b75fc69b05b779cb3ab15e67b41b39e2;p=samtools.git

diff --git a/bam_mcns.h b/bam_mcns.h
index 5c7c420..0781975 100644
--- a/bam_mcns.h
+++ b/bam_mcns.h
@@ -8,7 +8,7 @@ typedef struct __mc_aux_t mc_aux_t;
 
 typedef struct {
 	// O(n)
-	int ref, alt;
+	int ref, alt, alt2;
 	double f_em, f_naive, f_nielsen;
 	// O(n^2)
 	double PD, p_ref, f_exp;
@@ -18,6 +18,7 @@ typedef struct {
 
 #define MC_PTYPE_FULL  1
 #define MC_PTYPE_COND2 2
+#define MC_PTYPE_FLAT  3
 
 #ifdef __cplusplus
 extern "C" {