X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=bam2bcf.c;h=98acb5dd2ff051eacb86f8efd72c00c370798617;hb=fee22b6b728d3f0115bec76f7b0e15cad330b7c0;hp=46f534ee7553182f790384921c8c667417838b75;hpb=ac136c56a4a4d3ec250584eada27b60b6d721d8b;p=samtools.git

diff --git a/bam2bcf.c b/bam2bcf.c
index 46f534e..98acb5d 100644
--- a/bam2bcf.c
+++ b/bam2bcf.c
@@ -79,7 +79,7 @@ int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t
 		}
 		bca->bases[n++] = q<<5 | (int)bam1_strand(p->b)<<4 | b;
 		// collect annotations
-		r->qsum[b] += q;
+		if (b < 4) r->qsum[b] += q;
 		++r->anno[0<<2|is_diff<<1|bam1_strand(p->b)];
 		min_dist = p->b->core.l_qseq - 1 - p->qpos;
 		if (min_dist > p->qpos) min_dist = p->qpos;