X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=bam.h;h=4c8536fd33366883028ff9b77bb95049682c5f9f;hb=c9a9c2742eecde8e097f70efdb6d599374ca325e;hp=a8769e26a38c3dc62ee4ded2dc793a90884d19a3;hpb=30f48c398267752648e19f521616789bcd5119a2;p=samtools.git

diff --git a/bam.h b/bam.h
index a8769e2..4c8536f 100644
--- a/bam.h
+++ b/bam.h
@@ -230,7 +230,7 @@ typedef struct __bam_iter_t *bam_iter_t;
   @param  b  pointer to an alignment
   @return    pointer to quality string
  */
-#define bam1_qual(b) ((b)->data + (b)->core.n_cigar*4 + (b)->core.l_qname + ((b)->core.l_qseq + 1)/2)
+#define bam1_qual(b) ((b)->data + (b)->core.n_cigar*4 + (b)->core.l_qname + (((b)->core.l_qseq + 1)>>1))
 
 /*! @function
   @abstract  Get a base on read
@@ -495,7 +495,7 @@ extern "C" {
 		bam1_t *b;
 		int32_t qpos;
 		int indel, level;
-		uint32_t is_del:1, is_head:1, is_tail:1;
+		uint32_t is_del:1, is_head:1, is_tail:1, is_refskip:1;
 	} bam_pileup1_t;
 
 	typedef int (*bam_plp_auto_f)(void *data, bam1_t *b);