X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=alignmentdb.cpp;h=5c758ecebb249710be141813a734eb571b88da32;hb=df92022fc75c08b91cefa2c6ca4fd7b23eb480b0;hp=4b89acb464ceccc6fd12d68ab717ece3bcb5dbd3;hpb=5dc27f45958c8c57c79e85c369121e92d70f9ca5;p=mothur.git diff --git a/alignmentdb.cpp b/alignmentdb.cpp index 4b89acb..5c758ec 100644 --- a/alignmentdb.cpp +++ b/alignmentdb.cpp @@ -17,7 +17,7 @@ AlignmentDB::AlignmentDB(string fastaFileName, string method, int kmerSize, float gapOpen, float gapExtend, float match, float misMatch){ // This assumes that the template database is in fasta format, may try { // need to alter this in the future? longest = 0; - cout << longest; + ifstream fastaFile; openInputFile(fastaFileName, fastaFile);