X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=alignment.hpp;h=7a943fd0037430991a7baab418474e78a496d403;hb=7a7870ab773b993d8d1fd89703b1df3beb47f8d4;hp=6dd7f0aed42938bd94a50bc6d4ebf88eda1c2b40;hpb=1244c4907c07baea86b0f0676d098a29d2e95a39;p=mothur.git

diff --git a/alignment.hpp b/alignment.hpp
index 6dd7f0a..7a943fd 100644
--- a/alignment.hpp
+++ b/alignment.hpp
@@ -49,6 +49,7 @@ protected:
 	int pairwiseLength;
 	int nRows, nCols, lA, lB;
 	vector<vector<AlignmentCell> > alignment;
+	MothurOut* m;
 };
 
 /**************************************************************************************************/