X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=aligncommand.cpp;h=95604fc4ff4f738dc780de23b01ab65d4f473fe7;hb=1c898913f53fe4c6574102896b967d9347d1b42a;hp=a75f9d0f944947f8d941731c0322444e68d40682;hpb=86c838c428a9e7d26f902f5492738241fa72c4e7;p=mothur.git

diff --git a/aligncommand.cpp b/aligncommand.cpp
index a75f9d0..95604fc 100644
--- a/aligncommand.cpp
+++ b/aligncommand.cpp
@@ -103,6 +103,7 @@ AlignCommand::AlignCommand(string option)  {
 	
 		//allow user to run help
 		if(option == "help") { help(); abort = true; calledHelp = true;}
+		else if(option == "citation") { citation(); abort = true; calledHelp = true;}
 		
 		else {
 			vector<string> myArray = setParameters();