X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=sidebyside;f=Mothur.xcodeproj%2Fproject.pbxproj;h=ce07a034d64154d2d77fcf7cab64f922bec56231;hb=b0997605981902442138b9309e9c43d95c3ba10a;hp=0c8c2dd5d35e4fe54d1a705b1874fe2c78594fb5;hpb=be9f55335e412666b17b9d4f2c00cff59e0fb60d;p=mothur.git diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 0c8c2dd..ce07a03 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -17,6 +17,7 @@ A70056E6156A93D000924A2D /* getotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056E5156A93D000924A2D /* getotulabelscommand.cpp */; }; A70056EB156AB6E500924A2D /* removeotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */; }; A70332B712D3A13400761E33 /* makefile in Sources */ = {isa = PBXBuildFile; fileRef = A70332B512D3A13400761E33 /* makefile */; }; + A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7128B1C16B7002600723BE4 /* getdistscommand.cpp */; }; A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; }; A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */; }; A71CB160130B04A2001E7287 /* anosimcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71CB15E130B04A2001E7287 /* anosimcommand.cpp */; }; @@ -39,6 +40,7 @@ A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */; }; A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */; }; A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74A9A9E148E881E00AB5E3E /* spline.cpp */; }; + A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */; }; A74D36B8137DAFAA00332B0C /* chimerauchimecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */; }; A74D59A4159A1E2000043046 /* counttable.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D59A3159A1E2000043046 /* counttable.cpp */; }; A754149714840CF7005850D1 /* summaryqualcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A754149614840CF7005850D1 /* summaryqualcommand.cpp */; }; @@ -56,12 +58,15 @@ A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7876A25152A017C00A0AE86 /* subsample.cpp */; }; A79234D713C74BF6002B08E2 /* mothurfisher.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79234D613C74BF6002B08E2 /* mothurfisher.cpp */; }; A795840D13F13CD900F201D5 /* countgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A795840C13F13CD900F201D5 /* countgroupscommand.cpp */; }; + A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */; }; A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */; }; + A79EEF8616971D4A0006DEC1 /* filtersharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */; }; A7A0671A1562946F0095C8C5 /* listotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */; }; A7A0671F1562AC3E0095C8C5 /* makecontigscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */; }; A7A32DAA14DC43B00001D2E5 /* sortseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */; }; A7A3C8C914D041AD00B1BFBE /* otuassociationcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */; }; A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A61F2C130062E000E05B6B /* amovacommand.cpp */; }; + A7B0231516B8244C006BA09E /* removedistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7B0231416B8244B006BA09E /* removedistscommand.cpp */; }; A7BF221414587886000AD524 /* myPerseus.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF221214587886000AD524 /* myPerseus.cpp */; }; A7BF2232145879B2000AD524 /* chimeraperseuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */; }; A7C3DC0B14FE457500FE1924 /* cooccurrencecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */; }; @@ -363,7 +368,7 @@ outputFiles = ( "$(TARGET_BUILD_DIR)/$(INPUT_FILE_BASE).o", ); - script = "/usr/local/gfortran/bin/gfortran -g -m64 -c ${PROJECT_DIR}/${INPUT_FILE_NAME} -o ${TARGET_BUILD_DIR}/${INPUT_FILE_BASE}.o"; + script = "/usr/local/bin/gfortran -g -m64 -c ${PROJECT_DIR}/${INPUT_FILE_NAME} -o ${TARGET_BUILD_DIR}/${INPUT_FILE_BASE}.o"; }; /* End PBXBuildRule section */ @@ -400,6 +405,8 @@ A70056E9156AB6D400924A2D /* removeotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removeotulabelscommand.h; sourceTree = ""; }; A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removeotulabelscommand.cpp; sourceTree = ""; }; A70332B512D3A13400761E33 /* makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; path = makefile; sourceTree = ""; }; + A7128B1A16B7001200723BE4 /* getdistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getdistscommand.h; sourceTree = ""; }; + A7128B1C16B7002600723BE4 /* getdistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getdistscommand.cpp; sourceTree = ""; }; A713EBAA12DC7613000092AC /* readphylipvector.h */ = {isa = PBXFileReference; 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fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = primerdesigncommand.h; sourceTree = ""; }; + A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = primerdesigncommand.cpp; sourceTree = ""; }; A74D36B6137DAFAA00332B0C /* chimerauchimecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerauchimecommand.h; sourceTree = ""; }; A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerauchimecommand.cpp; sourceTree = ""; }; A74D59A3159A1E2000043046 /* counttable.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = counttable.cpp; sourceTree = ""; }; @@ -479,8 +488,12 @@ A79234D613C74BF6002B08E2 /* mothurfisher.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothurfisher.cpp; sourceTree = ""; }; A795840B13F13CD900F201D5 /* countgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = countgroupscommand.h; sourceTree = ""; }; A795840C13F13CD900F201D5 /* countgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = countgroupscommand.cpp; sourceTree = ""; }; + A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mergetaxsummarycommand.h; sourceTree = ""; }; + A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mergetaxsummarycommand.cpp; sourceTree = ""; }; A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makefastqcommand.h; sourceTree = ""; }; A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makefastqcommand.cpp; sourceTree = ""; }; + A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = filtersharedcommand.cpp; sourceTree = ""; }; + A79EEF8816971D640006DEC1 /* filtersharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = filtersharedcommand.h; sourceTree = ""; }; A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listotulabelscommand.cpp; sourceTree = ""; }; A7A0671C156294810095C8C5 /* listotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = listotulabelscommand.h; sourceTree = ""; }; A7A0671D1562AC230095C8C5 /* makecontigscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makecontigscommand.h; sourceTree = ""; }; @@ -493,6 +506,8 @@ A7A61F2B130062E000E05B6B /* amovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = amovacommand.h; sourceTree = ""; }; A7A61F2C130062E000E05B6B /* amovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = amovacommand.cpp; sourceTree = ""; }; A7AACFBA132FE008003D6C4D /* currentfile.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = currentfile.h; sourceTree = ""; }; + A7B0231416B8244B006BA09E /* removedistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removedistscommand.cpp; sourceTree = ""; }; + A7B0231716B8245D006BA09E /* removedistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removedistscommand.h; sourceTree = ""; }; A7BF221214587886000AD524 /* myPerseus.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = myPerseus.cpp; sourceTree = ""; }; A7BF221314587886000AD524 /* myPerseus.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = myPerseus.h; sourceTree = ""; }; A7BF2230145879B2000AD524 /* chimeraperseuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraperseuscommand.h; sourceTree = ""; }; @@ -1344,12 +1359,16 @@ A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */, A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */, A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */, + A79EEF8816971D640006DEC1 /* filtersharedcommand.h */, + A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */, A778FE69134CA6CA00C0BA33 /* getcommandinfocommand.h */, A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */, 219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */, 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */, A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */, A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */, + A7128B1A16B7001200723BE4 /* getdistscommand.h */, + A7128B1C16B7002600723BE4 /* getdistscommand.cpp */, A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */, A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */, A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */, @@ -1414,6 +1433,8 @@ A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */, A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */, A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */, + A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */, + A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */, A7E9B75812D37EC400DA6239 /* metastatscommand.h */, A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */, A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */, @@ -1450,12 +1471,16 @@ A7E9B79512D37EC400DA6239 /* pipelinepdscommand.cpp */, A7E9B79812D37EC400DA6239 /* preclustercommand.h */, A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */, + A74C06E616A9C097008390A3 /* primerdesigncommand.h */, + A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */, A7E9B7A212D37EC400DA6239 /* quitcommand.h */, A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */, A7E9B7AC12D37EC400DA6239 /* rarefactcommand.h */, A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */, A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */, A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */, + A7B0231716B8245D006BA09E /* removedistscommand.h */, + A7B0231416B8244B006BA09E /* removedistscommand.cpp */, A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */, A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */, A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */, @@ -1705,11 +1730,11 @@ A7E9B66512D37EC400DA6239 /* blastdb.hpp */, A74D59A6159A1E3600043046 /* counttable.h */, A74D59A3159A1E2000043046 /* counttable.cpp */, - A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6BD12D37EC400DA6239 /* database.cpp */, A7E9B6BE12D37EC400DA6239 /* database.hpp */, A7E9B6BF12D37EC400DA6239 /* datavector.hpp */, A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */, + A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */, A7E9B6DF12D37EC400DA6239 /* fastamap.h */, A7E9B6E812D37EC400DA6239 /* flowdata.h */, @@ -1933,7 +1958,7 @@ 08FB7793FE84155DC02AAC07 /* Project object */ = { isa = PBXProject; attributes = { - LastUpgradeCheck = 0420; + LastUpgradeCheck = 0460; ORGANIZATIONNAME = "Schloss Lab"; }; buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */; @@ -2304,6 +2329,11 @@ 834D9D581656D7C400E7FAB9 /* regularizedrandomforest.cpp in Sources */, 834D9D5C1656DEC800E7FAB9 /* regularizeddecisiontree.cpp in Sources */, A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */, + A79EEF8616971D4A0006DEC1 /* filtersharedcommand.cpp in Sources */, + A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */, + A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */, + A7B0231516B8244C006BA09E /* removedistscommand.cpp in Sources */, + A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -2323,7 +2353,7 @@ GCC_OPTIMIZATION_LEVEL = 3; "INSTALL_PATH[sdk=*]" = TARGET_BUILD_DIR; PRODUCT_NAME = mothur; - SDKROOT = macosx10.6; + SDKROOT = macosx10.8; SKIP_INSTALL = NO; }; name = Debug; @@ -2339,6 +2369,7 @@ GCC_OPTIMIZATION_LEVEL = 3; GCC_WARN_UNUSED_VALUE = YES; PRODUCT_NAME = mothur; + SDKROOT = macosx; SKIP_INSTALL = NO; }; name = Release; @@ -2354,9 +2385,9 @@ GCC_ENABLE_SSE42_EXTENSIONS = NO; GCC_OPTIMIZATION_LEVEL = 3; GCC_PREPROCESSOR_DEFINITIONS = ( - "MOTHUR_FILES=\"\\\"../release\\\"\"", - "VERSION=\"\\\"1.28.0\\\"\"", - "RELEASE_DATE=\"\\\"11/2/2012\\\"\"", + "MOTHUR_FILES=\"\\\"../../release\\\"\"", + "VERSION=\"\\\"1.29.2\\\"\"", + "RELEASE_DATE=\"\\\"2/12/2013\\\"\"", ); "GCC_VERSION[arch=*]" = ""; GCC_WARN_ABOUT_MISSING_NEWLINE = YES; @@ -2375,7 +2406,7 @@ "-lncurses", "-lreadline", ); - SDKROOT = macosx10.6; + SDKROOT = macosx; SKIP_INSTALL = NO; USER_HEADER_SEARCH_PATHS = ""; }; @@ -2391,8 +2422,8 @@ GCC_MODEL_TUNING = ""; GCC_OPTIMIZATION_LEVEL = 3; GCC_PREPROCESSOR_DEFINITIONS = ( - "VERSION=\"\\\"1.28.0\\\"\"", - "RELEASE_DATE=\"\\\"11/2/2012\\\"\"", + "VERSION=\"\\\"1.30.0\\\"\"", + "RELEASE_DATE=\"\\\"4/01/2013\\\"\"", ); GCC_WARN_ABOUT_MISSING_NEWLINE = YES; GCC_WARN_ABOUT_RETURN_TYPE = YES; @@ -2413,7 +2444,7 @@ "-lncurses", "-lreadline", ); - SDKROOT = macosx10.6; + SDKROOT = macosx; SKIP_INSTALL = NO; }; name = Release;