X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=inline;f=trimseqscommand.cpp;h=acdf475a17ccc544c96e6d519d58867cf50b3374;hb=c6e5f84783b39a558119835963dec3c4facb0154;hp=3c1367a17eadd176edf05078c46b4e4a398d4640;hpb=9b884118e97081d743c7b001216567f9b9131258;p=mothur.git

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index 3c1367a..acdf475 100644
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -315,7 +315,7 @@ int TrimSeqsCommand::execute(){
 				
 				if (m->control_pressed) {  return 0; }
 		#else
-				driverCreateTrim(fastaFile, qFileName, trimSeqFile, scrapSeqFile, trimQualFile, scrapQualFile, groupFile, fastaFileNames, qualFileNames, lines[0], qlines[0]);
+				driverCreateTrim(fastaFile, qFileName, trimSeqFile, scrapSeqFile, trimQualFile, scrapQualFile, groupFile, fastaFileNames, qualFileNames, lines[0], qLines[0]);
 				
 				for (int j = 0; j < fastaFileNames.size(); j++) {
 					rename((fastaFileNames[j] + toString(j) + ".temp").c_str(), fastaFileNames[j].c_str());