X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=inline;f=org-ref.el;h=b9fcf3091707cdfcfa8aa8d747e1cb99482b4efe;hb=7f594acb917a800c221000f40d2a3a9480d9e4ad;hp=86d2464e013069f31e568229e8073363a4b0b186;hpb=a88e359712d3a7fdfaf71a23f72034bfa9e05ddb;p=org-ref.git
diff --git a/org-ref.el b/org-ref.el
index 86d2464..b9fcf30 100644
--- a/org-ref.el
+++ b/org-ref.el
@@ -41,6 +41,7 @@
(require 'helm-config)
(require 'helm-bibtex)
(require 'org)
+(require 'org-element)
;; * Custom variables
(defgroup org-ref nil
@@ -81,15 +82,19 @@ You should use full-paths for each file."
'(("article" . "%a, %t, %j, %v(%n), %p (%y). link. doi.")
("book" . "%a, %t, %u (%y).")
-
+ ("techreport" . "%a, %t, %i, %u (%y).")
("proceedings" . "%e, %t in %S, %u (%y).")
-
("inproceedings" . "%a, %t, %p, in %b, edited by %e, %u (%y)"))
-
"String to format an entry. Just the reference, no numbering at the beginning, etc... see the `org-ref-reftex-format-citation' docstring for the escape codes."
:type 'string
:group 'org-ref)
+(defcustom org-ref-note-title-format
+ "** TODO %y - %t"
+ "String to format the title of a note. See the `org-ref-reftex-format-citation' docstring for the escape codes."
+ :type 'string
+ :group 'org-ref)
+
(defcustom org-ref-open-notes-function
(lambda ()
(org-show-entry)
@@ -326,15 +331,15 @@ You will see a message in the minibuffer when on a cite, ref or label link."
(replace-regexp-in-string "\*" "\\\\*" x)
)
org-ref-cite-types "\\|") "\\)"
- ":\\([a-zA-Z0-9-_:\\.]*,?\\)*"))
+ ":\\([a-zA-Z0-9-_:\\./]*,?\\)*"))
-(setq org-ref-label-re
- "label:\\([a-zA-Z0-9-_:]*,?\\)*")
+(defvar org-ref-label-re
+ "label:\\([a-zA-Z0-9-_:]*,?\\)*")
-(setq org-ref-ref-re
- "\\(eq\\)?ref:\\([a-zA-Z0-9-_:]*,?\\)*")
+(defvar org-ref-ref-re
+ "\\(eq\\)?ref:\\([a-zA-Z0-9-_:]*,?\\)*")
(defface org-ref-cite-face
@@ -423,7 +428,6 @@ Beware that all this only works with BibTeX database files. When
citations are made from the \bibitems in an explicit thebibliography
environment, only %l is available."
;; Format a citation from the info in the BibTeX ENTRY
-
(unless (stringp format) (setq format "\\cite{%l}"))
(if (and reftex-comment-citations
@@ -460,8 +464,11 @@ environment, only %l is available."
((= l ?E) (car (reftex-get-bib-names "editor" entry)))
((= l ?h) (org-ref-reftex-get-bib-field "howpublished" entry))
((= l ?i) (org-ref-reftex-get-bib-field "institution" entry))
- ((= l ?j) (org-ref-reftex-get-bib-field "journal" entry))
- ((= l ?k) (org-ref-reftex-get-bib-field "key" entry))
+ ((= l ?j) (let ((jt (reftex-get-bib-field "journal" entry)))
+ (if (string= "" jt)
+ (reftex-get-bib-field "journaltitle" entry)
+ jt)))
+ ((= l ?k) (org-ref-reftex-get-bib-field "=key=" entry))
((= l ?m) (org-ref-reftex-get-bib-field "month" entry))
((= l ?n) (org-ref-reftex-get-bib-field "number" entry))
((= l ?o) (org-ref-reftex-get-bib-field "organization" entry))
@@ -477,7 +484,9 @@ environment, only %l is available."
;; strip enclosing brackets from title if they are there
((= l ?t) (org-ref-reftex-get-bib-field "title" entry))
((= l ?T) (reftex-abbreviate-title
- (org-ref-reftex-get-bib-field "title" entry)))
+ ((replace-regexp-in-string
+ "\n\\|\t\\|\s+" " "
+ (org-ref-reftex-get-bib-field "title" entry)))))
((= l ?v) (org-ref-reftex-get-bib-field "volume" entry))
((= l ?y) (org-ref-reftex-get-bib-field "year" entry)))))
@@ -489,8 +498,6 @@ environment, only %l is available."
(setq format (replace-match "%" t t format)))
(while (string-match "[ ,.;:]*%<" format)
(setq format (replace-match "" t t format)))
- ;; also replace carriage returns, tabs, and multiple whitespaces
- (setq format (replace-regexp-in-string "\n\\|\t\\|\s+" " " format))
format)
(defun org-ref-get-bibtex-entry-citation (key)
@@ -501,20 +508,25 @@ Format according to the type in `org-ref-bibliography-entry-format'."
(file) (entry) (bibtex-entry) (entry-type) (format))
(setq file (catch 'result
- (loop for file in org-ref-bibliography-files do
- (if (org-ref-key-in-file-p key (file-truename file))
- (throw 'result file)
- (message "%s not found in %s"
- key (file-truename file))))))
+ (cl-loop for file in org-ref-bibliography-files do
+ (if (org-ref-key-in-file-p key (file-truename file))
+ (throw 'result file)
+ (message "%s not found in %s"
+ key (file-truename file))))))
(with-temp-buffer
(insert-file-contents file)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key nil 0)
(setq bibtex-entry (bibtex-parse-entry))
+ ;; downcase field names so they work in the format-citation code
+ (dolist (cons-cell bibtex-entry)
+ (setf (car cons-cell) (downcase (car cons-cell))))
(setq entry-type (downcase (cdr (assoc "=type=" bibtex-entry))))
(setq format (cdr (assoc entry-type org-ref-bibliography-entry-format)))
(if format
(setq entry (org-ref-reftex-format-citation bibtex-entry format))
+ ;; if no format, we use the bibtex entry itself as a fallback
(save-restriction
(bibtex-narrow-to-entry)
(setq entry (buffer-string)))))
@@ -540,8 +552,22 @@ Format according to the type in `org-ref-bibliography-entry-format'."
(defun org-ref-get-bibtex-entry-html (key)
"Return an html string for the bibliography entry corresponding to KEY."
-
- (format "
"
+ key key output)))
(defun org-ref-get-html-bibliography ()
"Create an html bibliography when there are keys."
@@ -558,13 +584,14 @@ Format according to the type in `org-ref-bibliography-entry-format'."
(file) (entry) (bibtex-entry) (entry-type) (format))
(setq file (catch 'result
- (loop for file in org-ref-bibliography-files do
+ (cl-loop for file in org-ref-bibliography-files do
(if (org-ref-key-in-file-p key (file-truename file))
(throw 'result file)
(message "%s not found in %s" key (file-truename file))))))
(with-temp-buffer
(insert-file-contents file)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key nil 0)
(setq entry (bibtex-parse-entry))
(format "** %s - %s
@@ -612,45 +639,54 @@ Format according to the type in `org-ref-bibliography-entry-format'."
;; may contain multiple files. this code finds the
;; one you clicked on and opens it.
(lambda (link-string)
- ;; get link-string boundaries
- ;; we have to go to the beginning of the line, and then search forward
-
+ ;; get link-string boundaries we have to go to the
+ ;; beginning of the line, and then search forward
(let* ((bibfile)
;; object is the link you clicked on
(object (org-element-context))
(link-string-beginning)
- (link-string-end))
-
+ (link-string-end)
+ (cp (point)))
(save-excursion
(goto-char (org-element-property :begin object))
(search-forward link-string nil nil 1)
(setq link-string-beginning (match-beginning 0))
(setq link-string-end (match-end 0)))
- ;; We set the reftex-default-bibliography
- ;; here. it should be a local variable only in
- ;; the current buffer. We need this for using
- ;; reftex to do citations.
- (set (make-local-variable 'reftex-default-bibliography)
- (split-string (org-element-property :path object) ","))
-
+ ;; Make sure point is in the link-path.
+ (if (< cp link-string-beginning)
+ (goto-char link-string-beginning))
+ ;; We set the reftex-default-bibliography
+ ;; here. it should be a local variable only in
+ ;; the current buffer. We need this for using
+ ;; reftex to do citations.
+ (set (make-local-variable 'reftex-default-bibliography)
+ (split-string
+ (org-element-property :path object) ","))
+
+ (let (key-beginning key-end)
;; now if we have comma separated bibliographies
;; we find the one clicked on. we want to
;; search forward to next comma from point
(save-excursion
(if (search-forward "," link-string-end 1 1)
- (setq key-end (- (match-end 0) 1)) ; we found a match
- (setq key-end (point)))) ; no comma found so take the point
+ ;; we found a match
+ (setq key-end (- (match-end 0) 1))
+ ;; no comma found so take the point
+ (setq key-end (point))))
;; and backward to previous comma from point
(save-excursion
(if (search-backward "," link-string-beginning 1 1)
- (setq key-beginning (+ (match-beginning 0) 1)) ; we found a match
+ ;; we found a match
+ (setq key-beginning (+ (match-beginning 0) 1))
(setq key-beginning (point)))) ; no match found
;; save the key we clicked on.
- (setq bibfile (org-ref-strip-string (buffer-substring key-beginning key-end)))
- (find-file bibfile))) ; open file on click
+ (setq bibfile (org-ref-strip-string
+ (buffer-substring key-beginning key-end)))
+ ;; open file on click
+ (find-file bibfile))))
- ;; formatting code
+ ;; formatting code
(lambda (keyword desc format)
(cond
((eq format 'org) (org-ref-get-org-bibliography))
@@ -658,10 +694,14 @@ Format according to the type in `org-ref-bibliography-entry-format'."
((eq format 'html) (org-ref-get-html-bibliography))
((eq format 'latex)
;; write out the latex bibliography command
- (format "\\bibliography{%s}" (replace-regexp-in-string "\\.bib" "" (mapconcat 'identity
- (mapcar 'expand-file-name
- (split-string keyword ","))
- ",")))))))
+ (format "\\bibliography{%s}"
+ (replace-regexp-in-string
+ "\\.bib" ""
+ (mapconcat
+ 'identity
+ (mapcar 'expand-file-name
+ (split-string keyword ","))
+ ",")))))))
(org-add-link-type "nobibliography"
;; this code is run on clicking. The bibliography
@@ -691,21 +731,22 @@ Format according to the type in `org-ref-bibliography-entry-format'."
(set (make-local-variable 'reftex-default-bibliography)
(split-string (org-element-property :path object) ","))
- ;; now if we have comma separated bibliographies
- ;; we find the one clicked on. we want to
- ;; search forward to next comma from point
- (save-excursion
- (if (search-forward "," link-string-end 1 1)
- (setq key-end (- (match-end 0) 1)) ; we found a match
- (setq key-end (point)))) ; no comma found so take the point
- ;; and backward to previous comma from point
- (save-excursion
- (if (search-backward "," link-string-beginning 1 1)
- (setq key-beginning (+ (match-beginning 0) 1)) ; we found a match
- (setq key-beginning (point)))) ; no match found
- ;; save the key we clicked on.
- (setq bibfile (org-ref-strip-string (buffer-substring key-beginning key-end)))
- (find-file bibfile))) ; open file on click
+ (let (key-beginning key-end)
+ ;; now if we have comma separated bibliographies
+ ;; we find the one clicked on. we want to
+ ;; search forward to next comma from point
+ (save-excursion
+ (if (search-forward "," link-string-end 1 1)
+ (setq key-end (- (match-end 0) 1)) ; we found a match
+ (setq key-end (point)))) ; no comma found so take the point
+ ;; and backward to previous comma from point
+ (save-excursion
+ (if (search-backward "," link-string-beginning 1 1)
+ (setq key-beginning (+ (match-beginning 0) 1)) ; we found a match
+ (setq key-beginning (point)))) ; no match found
+ ;; save the key we clicked on.
+ (setq bibfile (org-ref-strip-string (buffer-substring key-beginning key-end)))
+ (find-file bibfile)))) ; open file on click
;; formatting code
(lambda (keyword desc format)
@@ -715,20 +756,11 @@ Format according to the type in `org-ref-bibliography-entry-format'."
((eq format 'html) (org-ref-get-html-bibliography))
((eq format 'latex)
;; write out the latex bibliography command
-
-; (format "{\\setbox0\\vbox{\\bibliography{%s}}}"
-; (replace-regexp-in-string "\\.bib" "" (mapconcat 'identity
-; (mapcar 'expand-file-name
-; (split-string keyword ","))
-; ",")))
-
(format "\\nobibliography{%s}"
(replace-regexp-in-string "\\.bib" "" (mapconcat 'identity
(mapcar 'expand-file-name
(split-string keyword ","))
- ",")))
-
- ))))
+ ",")))))))
(org-add-link-type "printbibliography"
(lambda (arg) (message "Nothing implemented for clicking here."))
@@ -738,8 +770,7 @@ Format according to the type in `org-ref-bibliography-entry-format'."
((eq format 'html) (org-ref-get-html-bibliography))
((eq format 'latex)
;; write out the biblatex bibliography command
- "\\printbibliography"))
-))
+ "\\printbibliography"))))
(org-add-link-type "bibliographystyle"
(lambda (arg) (message "Nothing implemented for clicking here."))
@@ -747,7 +778,10 @@ Format according to the type in `org-ref-bibliography-entry-format'."
(cond
((eq format 'latex)
;; write out the latex bibliography command
- (format "\\bibliographystyle{%s}" keyword)))))
+ (format "\\bibliographystyle{%s}" keyword))
+ ;; Other styles should not have an output for this
+ (t
+ ""))))
(defun org-bibliographystyle-complete-link (&optional arg)
@@ -804,21 +838,22 @@ ARG does nothing."
(set (make-local-variable 'reftex-default-addbibresource)
(split-string (org-element-property :path object) ","))
- ;; now if we have comma separated bibliographies
- ;; we find the one clicked on. we want to
- ;; search forward to next comma from point
- (save-excursion
- (if (search-forward "," link-string-end 1 1)
- (setq key-end (- (match-end 0) 1)) ; we found a match
- (setq key-end (point)))) ; no comma found so take the point
- ;; and backward to previous comma from point
- (save-excursion
- (if (search-backward "," link-string-beginning 1 1)
- (setq key-beginning (+ (match-beginning 0) 1)) ; we found a match
- (setq key-beginning (point)))) ; no match found
- ;; save the key we clicked on.
- (setq bibfile (org-ref-strip-string (buffer-substring key-beginning key-end)))
- (find-file bibfile))) ; open file on click
+ (let (key-beginning key-end)
+ ;; now if we have comma separated bibliographies
+ ;; we find the one clicked on. we want to
+ ;; search forward to next comma from point
+ (save-excursion
+ (if (search-forward "," link-string-end 1 1)
+ (setq key-end (- (match-end 0) 1)) ; we found a match
+ (setq key-end (point)))) ; no comma found so take the point
+ ;; and backward to previous comma from point
+ (save-excursion
+ (if (search-backward "," link-string-beginning 1 1)
+ (setq key-beginning (+ (match-beginning 0) 1)) ; we found a match
+ (setq key-beginning (point)))) ; no match found
+ ;; save the key we clicked on.
+ (setq bibfile (org-ref-strip-string (buffer-substring key-beginning key-end)))
+ (find-file bibfile)))) ; open file on click
;; formatting code
(lambda (keyword desc format)
@@ -845,11 +880,11 @@ ARG does nothing."
(string-match-p
"[^.]*\\.\\(png\\|jpg\\|eps\\|pdf\\)$"
(org-element-property :path link)))
- (incf counter)
+ (cl-incf counter)
(let* ((start (org-element-property :begin link))
(parent (car (cdr (org-element-property :parent link))))
- (caption (caaar (plist-get parent :caption)))
+ (caption (cl-caaar (plist-get parent :caption)))
(name (plist-get parent :name)))
(if caption
(format
@@ -888,10 +923,10 @@ ARG does nothing."
(org-element-map (org-element-parse-buffer 'element) 'table
(lambda (table)
"create a link for to the table"
- (incf counter)
+ (cl-incf counter)
(let ((start (org-element-property :begin table))
(name (org-element-property :name table))
- (caption (caaar (org-element-property :caption table))))
+ (caption (cl-caaar (org-element-property :caption table))))
(if caption
(format
"[[elisp:(progn (switch-to-buffer \"%s\")(widen)(goto-char %s))][table %s: %s]] %s\n"
@@ -948,7 +983,7 @@ ARG does nothing."
(org-ref-count-labels label))))
(lambda (keyword desc format)
(cond
- ((eq format 'html) (format "()" path))
+ ((eq format 'html) (format "
" keyword))
((eq format 'latex)
(format "\\label{%s}" keyword)))))
@@ -1027,7 +1062,7 @@ ARG does nothing."
;formatting
(lambda (keyword desc format)
(cond
- ((eq format 'html) (format "(%s)" path))
+ ((eq format 'html) (format "%s" keyword keyword))
((eq format 'latex)
(format "\\ref{%s}" keyword)))))
@@ -1202,19 +1237,19 @@ Use C-u C-u to insert a [[#custom-id]] link"
(helm :input (thing-at-point 'word)
:sources `(((name . "Available labels to ref")
- (candidates . ,(loop for label in labels
- for context in contexts
- ;; we do some kludgy adding spaces
- ;; and bars to make it "easier" to
- ;; see in helm.
- collect (cons (concat
- label "\n"
- (mapconcat
- (lambda (x)
- (concat " |" x))
- (split-string context "\n")
- "\n"
- ) "\n\n") label)))
+ (candidates . ,(cl-loop for label in labels
+ for context in contexts
+ ;; we do some kludgy adding spaces
+ ;; and bars to make it "easier" to
+ ;; see in helm.
+ collect (cons (concat
+ label "\n"
+ (mapconcat
+ (lambda (x)
+ (concat " |" x))
+ (split-string context "\n")
+ "\n"
+ ) "\n\n") label)))
;; default action to replace or insert ref link.
(action . (lambda (label)
(switch-to-buffer ,cb)
@@ -1398,28 +1433,30 @@ keyword we clicked on. We also strip the text properties."
;; this means no description in the link
(progn
;; we need the link path start and end
- (save-excursion
- (goto-char (org-element-property :begin object))
- (search-forward link-string nil nil 1)
- (setq link-string-beginning (match-beginning 0))
- (setq link-string-end (match-end 0)))
+ (let (link-string-beginning link-string-end)
+ (save-excursion
+ (goto-char (org-element-property :begin object))
+ (search-forward link-string nil nil 1)
+ (setq link-string-beginning (match-beginning 0))
+ (setq link-string-end (match-end 0)))
- ;; The key is the text between commas, or the link boundaries
- (save-excursion
- (if (search-forward "," link-string-end t 1)
- (setq key-end (- (match-end 0) 1)) ; we found a match
- (setq key-end link-string-end))) ; no comma found so take the end
- ;; and backward to previous comma from point which defines the start character
- (save-excursion
- (if (search-backward "," link-string-beginning 1 1)
- (setq key-beginning (+ (match-beginning 0) 1)) ; we found a match
- (setq key-beginning link-string-beginning))) ; no match found
- ;; save the key we clicked on.
- (setq bibtex-key
- (org-ref-strip-string
- (buffer-substring key-beginning key-end)))
- (set-text-properties 0 (length bibtex-key) nil bibtex-key)
- bibtex-key)
+ (let (key-beginning key-end)
+ ;; The key is the text between commas, or the link boundaries
+ (save-excursion
+ (if (search-forward "," link-string-end t 1)
+ (setq key-end (- (match-end 0) 1)) ; we found a match
+ (setq key-end link-string-end))) ; no comma found so take the end
+ ;; and backward to previous comma from point which defines the start character
+ (save-excursion
+ (if (search-backward "," link-string-beginning 1 1)
+ (setq key-beginning (+ (match-beginning 0) 1)) ; we found a match
+ (setq key-beginning link-string-beginning))) ; no match found
+ ;; save the key we clicked on.
+ (let ((bibtex-key
+ (org-ref-strip-string
+ (buffer-substring key-beginning key-end))))
+ (set-text-properties 0 (length bibtex-key) nil bibtex-key)
+ bibtex-key))))
;; link with description. assume only one key
link-string)))
@@ -1486,9 +1523,9 @@ falling back to what the user has set in `org-ref-default-bibliography'"
(unless key
(setq key (org-ref-get-bibtex-key-under-cursor)))
(setq file (catch 'result
- (loop for file in org-ref-bibliography-files do
- (if (org-ref-key-in-file-p key (file-truename file))
- (throw 'result file)))))
+ (cl-loop for file in org-ref-bibliography-files do
+ (if (org-ref-key-in-file-p key (file-truename file))
+ (throw 'result file)))))
(cons key file)))
;; *** key at point functions
@@ -1513,6 +1550,7 @@ falling back to what the user has set in `org-ref-default-bibliography'"
(save-excursion
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key)
;; I like this better than bibtex-url which does not always find
;; the urls
@@ -1539,6 +1577,7 @@ falling back to what the user has set in `org-ref-default-bibliography'"
(save-excursion
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key)
(org-ref-open-bibtex-notes)))))
@@ -1553,6 +1592,7 @@ falling back to what the user has set in `org-ref-default-bibliography'"
(message "%s" (progn
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key)
(org-ref-bib-citation))))))
@@ -1625,6 +1665,7 @@ Prompt for NEW-FILE includes bib files in `org-ref-default-bibliography', and bi
(save-excursion
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key)
(setq doi (bibtex-autokey-get-field "doi"))
;; in case doi is a url, remove the url part.
@@ -1682,11 +1723,13 @@ get a lot of options. LINK-STRING is used by the link function."
(url (save-excursion
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key)
(bibtex-autokey-get-field "url"))))
(doi (save-excursion
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key)
;; I like this better than bibtex-url which does not always find
;; the urls
@@ -1763,6 +1806,7 @@ get a lot of options. LINK-STRING is used by the link function."
(save-excursion
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key)
(org-ref-bib-citation))))
"\n"
@@ -2067,17 +2111,20 @@ arg (ALTERNATIVE-CITE) to get a menu of citation types."
(defun org-ref-bib-citation ()
"From a bibtex entry, create and return a simple citation string.
This assumes you are in an article."
-
+ (bibtex-set-dialect nil t)
(bibtex-beginning-of-entry)
(let* ((cb (current-buffer))
(bibtex-expand-strings t)
- (entry (loop for (key . value) in (bibtex-parse-entry t)
- collect (cons (downcase key) value)))
+ (entry (cl-loop for (key . value) in (bibtex-parse-entry t)
+ collect (cons (downcase key) value)))
(title (replace-regexp-in-string "\n\\|\t\\|\s+" " " (reftex-get-bib-field "title" entry)))
(year (reftex-get-bib-field "year" entry))
(author (replace-regexp-in-string "\n\\|\t\\|\s+" " " (reftex-get-bib-field "author" entry)))
(key (reftex-get-bib-field "=key=" entry))
- (journal (reftex-get-bib-field "journal" entry))
+ (journal (let ((jt (reftex-get-bib-field "journal" entry)))
+ (if (string= "" jt)
+ (reftex-get-bib-field "journaltitle" entry)
+ jt)))
(volume (reftex-get-bib-field "volume" entry))
(pages (reftex-get-bib-field "pages" entry))
(doi (reftex-get-bib-field "doi" entry))
@@ -2089,12 +2136,11 @@ This assumes you are in an article."
(defun org-ref-bib-html-citation ()
"From a bibtex entry, create and return a simple citation with html links."
-
(bibtex-beginning-of-entry)
(let* ((cb (current-buffer))
(bibtex-expand-strings t)
- (entry (loop for (key . value) in (bibtex-parse-entry t)
- collect (cons (downcase key) value)))
+ (entry (cl-loop for (key . value) in (bibtex-parse-entry t)
+ collect (cons (downcase key) value)))
(title (replace-regexp-in-string "\n\\|\t\\|\s+" " " (reftex-get-bib-field "title" entry)))
(year (reftex-get-bib-field "year" entry))
(author (replace-regexp-in-string "\n\\|\t\\|\s+" " " (reftex-get-bib-field "author" entry)))
@@ -2103,14 +2149,13 @@ This assumes you are in an article."
(volume (reftex-get-bib-field "volume" entry))
(pages (reftex-get-bib-field "pages" entry))
(doi (reftex-get-bib-field "doi" entry))
- (url (reftex-get-bib-field "url" entry))
- )
+ (url (reftex-get-bib-field "url" entry)))
;;authors, "title", Journal, vol(iss):pages (year).
(concat (format "%s, \"%s\", %s, %s:%s (%s)."
author title journal volume pages year)
(when url (format " link" url))
- (when doi (format " doi" doi)))
- ))
+ (when doi
+ (format " doi" doi)))))
;; ** Open pdf in bibtex entry
(defun org-ref-open-bibtex-pdf ()
@@ -2145,18 +2190,9 @@ construct the heading by hand."
(bibtex-beginning-of-entry)
(let* ((cb (current-buffer))
(bibtex-expand-strings t)
- (entry (loop for (key . value) in (bibtex-parse-entry t)
- collect (cons (downcase key) value)))
- (title (replace-regexp-in-string "\n\\|\t\\|\s+" " " (reftex-get-bib-field "title" entry)))
- (year (reftex-get-bib-field "year" entry))
- (author (replace-regexp-in-string "\n\\|\t\\|\s+" " " (reftex-get-bib-field "author" entry)))
- (key (reftex-get-bib-field "=key=" entry))
- (journal (reftex-get-bib-field "journal" entry))
- (volume (reftex-get-bib-field "volume" entry))
- (pages (reftex-get-bib-field "pages" entry))
- (doi (reftex-get-bib-field "doi" entry))
- (url (reftex-get-bib-field "url" entry))
- )
+ (entry (cl-loop for (key . value) in (bibtex-parse-entry t)
+ collect (cons (downcase key) value)))
+ (key (reftex-get-bib-field "=key=" entry)))
;; save key to clipboard to make saving pdf later easier by pasting.
(with-temp-buffer
@@ -2173,38 +2209,41 @@ construct the heading by hand."
(if (re-search-forward (format ":Custom_ID: %s$" key) nil 'end)
(funcall org-ref-open-notes-function)
;; no entry found, so add one
- (insert (format "\n** TODO %s - %s" year title))
- (insert (format"
+ (insert (org-ref-reftex-format-citation entry (concat "\n" org-ref-note-title-format)))
+ (insert (org-ref-reftex-format-citation
+ entry
+ (concat "
:PROPERTIES:
- :Custom_ID: %s
- :AUTHOR: %s
- :JOURNAL: %s
- :YEAR: %s
- :VOLUME: %s
- :PAGES: %s
- :DOI: %s
- :URL: %s
+ :Custom_ID: %k
+ :AUTHOR: %9a
+ :JOURNAL: %j
+ :YEAR: %y
+ :VOLUME: %v
+ :PAGES: %p
+ :DOI: %D
+ :URL: %U
:END:
-[[cite:%s]] [[file:%s/%s.pdf][pdf]]\n\n"
-key author journal year volume pages doi url key org-ref-pdf-directory key))
-(save-buffer))))
+"
+ (format "[[cite:%s]] [[file:%s/%s.pdf][pdf]]\n\n"
+ key org-ref-pdf-directory key))))
+ (save-buffer))))
(defun org-ref-open-notes-from-reftex ()
"Call reftex, and open notes for selected entry."
(interactive)
(let ((bibtex-key )))
- ;; now look for entry in the notes file
- (if org-ref-bibliography-notes
- (find-file-other-window org-ref-bibliography-notes)
- (error "Org-ref-bib-bibliography-notes is not set to anything"))
+ ;; now look for entry in the notes file
+ (if org-ref-bibliography-notes
+ (find-file-other-window org-ref-bibliography-notes)
+ (error "Org-ref-bib-bibliography-notes is not set to anything"))
- (goto-char (point-min))
+ (goto-char (point-min))
- (re-search-forward (format
- ":Custom_ID: %s$"
- (first (reftex-citation t)) nil 'end))
- (funcall org-ref-open-notes-function))
+ (re-search-forward (format
+ ":Custom_ID: %s$"
+ (cl-first (reftex-citation t)) nil 'end))
+ (funcall org-ref-open-notes-function))
;; ** Open bibtex entry in browser
(defun org-ref-open-in-browser ()
@@ -2716,6 +2755,7 @@ Shows bad citations, ref links and labels"
(bibfile (cdr results)))
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key nil 0)
(prog1 (reftex-get-bib-field "year" (bibtex-parse-entry t))
))))
@@ -2733,7 +2773,7 @@ Shows bad citations, ref links and labels"
(setq keys (org-ref-split-and-strip-string link-string))
(setq years (mapcar 'org-ref-get-citation-year keys))
(setq data (mapcar* (lambda (a b) `(,a . ,b)) years keys))
- (setq data (cl-sort data (lambda (x y) (< (string-to-int (car x)) (string-to-int (car y))))))
+ (setq data (cl-sort data (lambda (x y) (< (string-to-number (car x)) (string-to-number (car y))))))
;; now get the keys separated by commas
(setq keys (mapconcat (lambda (x) (cdr x)) data ","))
;; and replace the link with the sorted keys
@@ -2845,87 +2885,89 @@ Shows bad citations, ref links and labels"
(defun org-ref-link-message ()
"Print a minibuffer message about the link that point is on."
(interactive)
- (when (eq major-mode 'org-mode)
- (let* ((object (org-element-context))
- (type (org-element-property :type object)))
- (save-excursion
- (cond
- ;; cite links
- ((-contains? org-ref-cite-types type)
- (message (org-ref-get-citation-string-at-point)))
-
- ;; message some context about the label we are referring to
- ((string= type "ref")
- (message "%scount: %s"
- (org-ref-get-label-context
- (org-element-property :path object))
- (org-ref-count-labels
- (org-element-property :path object))))
-
- ((string= type "eqref")
- (message "%scount: %s"
- (org-ref-get-label-context
- (org-element-property :path object))
- (org-ref-count-labels
- (org-element-property :path object))))
-
- ;; message the count
- ((string= type "label")
- (let ((count (org-ref-count-labels
- (org-element-property :path object))))
- ;; get plurality on occurrence correct
- (message (concat
- (number-to-string count)
- " occurence"
- (when (or (= count 0)
- (> count 1))
- "s")))))
-
- ((string= type "custom-id")
- (save-excursion
- (org-open-link-from-string
- (format "[[#%s]]" (org-element-property :path object)))
- (message "%s" (org-get-heading))))
-
- ;; check if the bibliography files exist.
- ((string= type "bibliography")
- (let* ((bibfile)
- ;; object is the link you clicked on
- (object (org-element-context))
- (link-string (org-element-property :path object))
- (link-string-beginning)
- (link-string-end))
- (save-excursion
- (goto-char (org-element-property :begin object))
- (search-forward link-string nil nil 1)
- (setq link-string-beginning (match-beginning 0))
- (setq link-string-end (match-end 0)))
-
- ;; make sure we are in link and not before the :
- (when (> link-string-beginning (point))
- (goto-char link-string-beginning))
-
- ;; now if we have comma separated bibliographies
- ;; we find the one clicked on. we want to
- ;; search forward to next comma from point
+ (save-restriction
+ (widen)
+ (when (eq major-mode 'org-mode)
+ (let* ((object (org-element-context))
+ (type (org-element-property :type object)))
+ (save-excursion
+ (cond
+ ;; cite links
+ ((-contains? org-ref-cite-types type)
+ (message (org-ref-get-citation-string-at-point)))
+
+ ;; message some context about the label we are referring to
+ ((string= type "ref")
+ (message "%scount: %s"
+ (org-ref-get-label-context
+ (org-element-property :path object))
+ (org-ref-count-labels
+ (org-element-property :path object))))
+
+ ((string= type "eqref")
+ (message "%scount: %s"
+ (org-ref-get-label-context
+ (org-element-property :path object))
+ (org-ref-count-labels
+ (org-element-property :path object))))
+
+ ;; message the count
+ ((string= type "label")
+ (let ((count (org-ref-count-labels
+ (org-element-property :path object))))
+ ;; get plurality on occurrence correct
+ (message (concat
+ (number-to-string count)
+ " occurence"
+ (when (or (= count 0)
+ (> count 1))
+ "s")))))
+
+ ((string= type "custom-id")
(save-excursion
- (if (search-forward "," link-string-end 1 1)
- (setq key-end (- (match-end 0) 1)) ; we found a match
- (setq key-end (point)))) ; no comma found so take the point
+ (org-open-link-from-string
+ (format "[[#%s]]" (org-element-property :path object)))
+ (message "%s" (org-get-heading))))
+
+ ;; check if the bibliography files exist.
+ ((string= type "bibliography")
+ (let* ((bibfile)
+ ;; object is the link you clicked on
+ (object (org-element-context))
+ (link-string (org-element-property :path object))
+ (link-string-beginning)
+ (link-string-end))
+ (save-excursion
+ (goto-char (org-element-property :begin object))
+ (search-forward link-string nil nil 1)
+ (setq link-string-beginning (match-beginning 0))
+ (setq link-string-end (match-end 0)))
+
+ ;; make sure we are in link and not before the :
+ (when (> link-string-beginning (point))
+ (goto-char link-string-beginning))
+
+ (let (key-beginning key-end)
+ ;; now if we have comma separated bibliographies
+ ;; we find the one clicked on. we want to
+ ;; search forward to next comma from point
+ (save-excursion
+ (if (search-forward "," link-string-end 1 1)
+ (setq key-end (- (match-end 0) 1)) ; we found a match
+ (setq key-end (point)))) ; no comma found so take the point
- ;; and backward to previous comma from point
- (save-excursion
- (if (search-backward "," link-string-beginning 1 1)
- (setq key-beginning (+ (match-beginning 0) 1)) ; we found a match
- (setq key-beginning (point)))) ; no match found
- ;; save the key we clicked on.
- (setq bibfile
- (org-ref-strip-string
- (buffer-substring key-beginning key-end)))
- (if (file-exists-p bibfile)
- (message "%s exists." bibfile)
- (message "!!! %s NOT FOUND !!!" bibfile))))
- )))))
+ ;; and backward to previous comma from point
+ (save-excursion
+ (if (search-backward "," link-string-beginning 1 1)
+ (setq key-beginning (+ (match-beginning 0) 1)) ; we found a match
+ (setq key-beginning (point)))) ; no match found
+ ;; save the key we clicked on.
+ (setq bibfile
+ (org-ref-strip-string
+ (buffer-substring key-beginning key-end)))
+ (if (file-exists-p bibfile)
+ (message "%s exists." bibfile)
+ (message "!!! %s NOT FOUND !!!" bibfile)))))))))))
;; ** aliases
(defalias 'oro 'org-ref-open-citation-at-point)
@@ -3060,17 +3102,17 @@ first key that partially matches. This version avoids that."
User is prompted for tags. This function is called from `helm-bibtex'.
Argument CANDIDATES helm candidates."
(message "")
- (let ((keywords (read-input "Keywords (comma separated): ")))
- (loop for key in (helm-marked-candidates)
- do
- (save-window-excursion
- (helm-bibtex-show-entry key)
- (bibtex-set-field
- "keywords"
- (concat
- keywords
- ", " (bibtex-autokey-get-field "keywords")))
- (save-buffer)))))
+ (let ((keywords (read-string "Keywords (comma separated): ")))
+ (cl-loop for key in (helm-marked-candidates)
+ do
+ (save-window-excursion
+ (helm-bibtex-show-entry key)
+ (bibtex-set-field
+ "keywords"
+ (concat
+ keywords
+ ", " (bibtex-autokey-get-field "keywords")))
+ (save-buffer)))))
(setq helm-source-bibtex
'((name . "BibTeX entries")
@@ -3098,11 +3140,13 @@ In the helm-bibtex buffer, C-u will give you a helm menu to select a new link ty
C-u C-u will change the key at point to the selected keys."
(let* ((object (org-element-context))
(last-char (save-excursion
- (goto-char (org-element-property :end object))
- (backward-char)
- (if (looking-at " ")
- " "
- ""))))
+ (when (org-element-property :end object)
+ (goto-char (org-element-property :end object))
+ (unless (bobp)
+ (backward-char))
+ (if (looking-at " ")
+ " "
+ "")))))
(cond
;; case where we are in a link
((and (equal (org-element-type object) 'link)
@@ -3136,7 +3180,7 @@ C-u C-u will change the key at point to the selected keys."
;; We are next to a link, and we want to append
;; next to a link means one character back is on a link.
((save-excursion
- (backward-char)
+ (unless (bobp) (backward-char))
(and (equal (org-element-type (org-element-context)) 'link)
(-contains?
org-ref-cite-types
@@ -3199,6 +3243,7 @@ With two prefix args, insert a label link."
(save-excursion
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key)
(org-ref-bib-citation)))
"!!! No entry found !!!" )))
@@ -3214,11 +3259,13 @@ Checks for pdf and doi, and add appropriate functions."
(url (save-excursion
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key)
(bibtex-autokey-get-field "url"))))
(doi (save-excursion
(with-temp-buffer
(insert-file-contents bibfile)
+ (bibtex-set-dialect (parsebib-find-bibtex-dialect) t)
(bibtex-search-entry key)
;; I like this better than bibtex-url which does not always find
;; the urls
@@ -3294,10 +3341,10 @@ Checks for pdf and doi, and add appropriate functions."
(email-bibtex-entry))))
t)
;; finally return a numbered list of the candidates
- (loop for i from 0
- for cell in candidates
- collect (cons (format "%2s. %s" i (car cell))
- (cdr cell)))))
+ (cl-loop for i from 0
+ for cell in candidates
+ collect (cons (format "%2s. %s" i (car cell))
+ (cdr cell)))))
(defvar org-ref-helm-user-candidates '()