X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=inline;f=chopseqscommand.h;h=92544ee30cb69df2f04b95a4e9f7c99c748e835e;hb=f0a594f6676ef5a52d1f122b6de70de2fda08c81;hp=dbf4d23b71ebc1302672e66bc65472331117713f;hpb=8f909cf6870cc2e4d8ed8cff69a203f6f83a160b;p=mothur.git

diff --git a/chopseqscommand.h b/chopseqscommand.h
index dbf4d23..92544ee 100644
--- a/chopseqscommand.h
+++ b/chopseqscommand.h
@@ -21,23 +21,22 @@ class ChopSeqsCommand : public Command {
 		ChopSeqsCommand(string);
 		ChopSeqsCommand();	
 		~ChopSeqsCommand(){};
-		vector<string> getRequiredParameters();
-		vector<string> getValidParameters();
-		vector<string> getRequiredFiles();
-		map<string, vector<string> > getOutputFiles() { return outputTypes; }
-		int execute();
-		void help();	
-		
+	
+		vector<string> setParameters();
+		string getCommandName()			{ return "chop.seqs";		}
+		string getCommandCategory()		{ return "Sequence Processing"; }
+		string getHelpString();	
+	
+		int execute(); 
+		void help() { m->mothurOut(getHelpString()); }		
+	
 	private:
 		string fastafile, outputDir, keep;
 		bool abort, countGaps, Short;
 		int numbases;
 		vector<string> outputNames;
-		map<string, vector<string> > outputTypes;
 		
 		string getChopped(Sequence);
-		
-		
 };
 
 #endif