X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;ds=inline;f=chopseqscommand.cpp;fp=chopseqscommand.cpp;h=abfd8dc239b185a69e86e7641a8505761ff9766e;hb=7f0cae4f4853cc3f12bc751ee06ea31c7c97496e;hp=e2b0fa46fc28bb6fd6be1af8a085e409a9a8b4df;hpb=113672689e4c84383a0304bfd21fb9574a77866c;p=mothur.git

diff --git a/chopseqscommand.cpp b/chopseqscommand.cpp
index e2b0fa4..abfd8dc 100644
--- a/chopseqscommand.cpp
+++ b/chopseqscommand.cpp
@@ -241,7 +241,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
 					}
 					
 					if (stopSpot == 0) { temp = ""; }
-					else {  temp = temp.substr(0, stopSpot);  }
+					else {  temp = temp.substr(0, stopSpot+1);  }
 							
 				}else { 
 					if (!Short) { temp = ""; } //sequence too short
@@ -294,7 +294,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
 					}
 					
 					if (stopSpot == 0) { temp = ""; }
-					else {  temp = temp.substr(0, stopSpot);  }
+					else {  temp = temp.substr(0, stopSpot+1);  }
 							
 				}else { 
 					if (!Short) { temp = ""; } //sequence too short
@@ -320,7 +320,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
 					}
 				
 					if (stopSpot == 0) { temp = ""; }
-					else {  temp = temp.substr(stopSpot+1);  }
+					else {  temp = temp.substr(stopSpot);  }
 				}else { 
 					if (!Short) { temp = ""; } //sequence too short
 				}