fixed encoding bug in read_454

[biopieces.git] / www / index.cgi

diff --git a/www/index.cgi b/www/index.cgi
index e33b06e096e26cbcc7a2097bb9b9dfb3a9c4240a..64314fa6520ff70122f3b54af9e6c473c8ee0665 100755 (executable)
--- a/www/index.cgi
+++ b/www/index.cgi
@@ -29,6 +29,7 @@ use CGI;
 use URI::Escape;
 use Data::Dumper;
 use Digest::MD5;
+use Time::HiRes;
 use Maasha::Common;
 use Maasha::Filesys;
 use Maasha::Calc;
@@ -182,9 +183,21 @@ sub cookie_default
     if ( $cookie->{ 'USER' } and not $cookie->{ 'LOGIN_ERROR' } )
     {
         $cookie->{ 'LIST_CLADE' }      = Maasha::BGB::Track::list_clades(     $cookie->{ 'USER' } );
-        $cookie->{ 'LIST_GENOME' }     = Maasha::BGB::Track::list_genomes(    $cookie->{ 'USER' }, $cookie->{ 'CLADE' } );
-        $cookie->{ 'LIST_ASSEMBLY' }   = Maasha::BGB::Track::list_assemblies( $cookie->{ 'USER' }, $cookie->{ 'CLADE' }, $cookie->{ 'GENOME' } );
-        $cookie->{ 'LIST_CONTIG' }     = Maasha::BGB::Track::list_contigs(    $cookie->{ 'USER' }, $cookie->{ 'CLADE' }, $cookie->{ 'GENOME' }, $cookie->{ 'ASSEMBLY' } );
+
+        if ( $cookie->{ 'CLADE' } )
+        {
+            $cookie->{ 'LIST_GENOME' }     = Maasha::BGB::Track::list_genomes(    $cookie->{ 'USER' }, $cookie->{ 'CLADE' } );
+
+            if ( $cookie->{ 'GENOME' } )
+            {
+                $cookie->{ 'LIST_ASSEMBLY' }   = Maasha::BGB::Track::list_assemblies( $cookie->{ 'USER' }, $cookie->{ 'CLADE' }, $cookie->{ 'GENOME' } );
+
+                if ( $cookie->{ 'ASSEMBLY' } )
+                {
+                    $cookie->{ 'LIST_CONTIG' }     = Maasha::BGB::Track::list_contigs(    $cookie->{ 'USER' }, $cookie->{ 'CLADE' }, $cookie->{ 'GENOME' }, $cookie->{ 'ASSEMBLY' } );
+                }
+            }
+        }
 
         if ( $cookie->{ 'CONTIG' } )
         {
@@ -1559,3 +1572,7 @@ sub section_dna
 
 
 __END__
+
+
+    # my $t0 = Time::HiRes::gettimeofday();
+    # my $t1 = Time::HiRes::gettimeofday(); print STDERR "Time: " . ( $t1 - $t0 ) . "\n";