public:
Weighted(TreeMap* t) : tmap(t) {};
~Weighted() {};
- EstOutput getValues(Tree*);
+
EstOutput getValues(Tree*, string, string);
+ EstOutput getValues(Tree*, int, string);
private:
+ struct linePair {
+ int start;
+ int num;
+ linePair(int i, int j) : start(i), num(j) {}
+ };
+ vector<linePair> lines;
+
GlobalData* globaldata;
EstOutput data;
TreeMap* tmap;
map<string, int>::iterator it;
map<string, double> WScore; //a score for each group combination i.e. AB, AC, BC.
+ int processors;
+ string outputDir;
+ map< vector<string>, set<int> > rootForGrouping; //maps a grouping combo to the root for that combo
+
+ EstOutput driver(Tree*, vector< vector<string> >, int, int);
+ EstOutput createProcesses(Tree*, vector< vector<string> >);
+ double getLengthToRoot(Tree*, int, string, string);
};
/***********************************************************************/