public:
VennCommand(string);
+ VennCommand();
~VennCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
vector<Calculator*> vennCalculators;
ValidCalculators* validCalculator;
vector<SharedRAbundVector*> lookup;
+ set< set<int> > combosOfFour;
SAbundVector* sabund;
int abund;
- bool abort, allLines;
- set<int> lines; //hold lines to be used
+ bool abort, allLines, nseqs, perm;
set<string> labels; //holds labels to be used
- string format, groups, calc, line, label;
- vector<string> Estimators, Groups;
+ string format, groups, calc, label, outputDir;
+ vector<string> Estimators, Groups, outputNames;
+ map<string, vector<string> > outputTypes;
+
+ set< set<int> > findCombinations(int);
+ int getCombos(set<int>, set< set<int> >&);
};
-#endif
\ No newline at end of file
+#endif