vector<string> setParameters();
string getCommandName() { return "unifrac.weighted"; }
string getCommandCategory() { return "Hypothesis Testing"; }
- string getHelpString();
+ string getOutputFileNameTag(string, string);
+ string getHelpString();
string getCitation() { return "Lozupone CA, Hamady M, Kelley ST, Knight R (2007). Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol 73: 1576-85. \nhttp://www.mothur.org/wiki/Unifrac.weighted"; }
string getDescription() { return "generic tests that describes whether two or more communities have the same structure"; }
bool abort, phylip, random, includeRoot, subsample, consensus;
string groups, itersString, outputForm, treefile, groupfile, namefile;
vector<string> Groups, outputNames; //holds groups to be used
- int processors, numUniquesInName, subsampleSize, subsampleIters;
+ int processors, subsampleSize, subsampleIters;
ofstream outSum;
map<string, string> nameMap;