class TrialSwap2 {
public:
- TrialSwap2(){ m = MothurOut::getInstance(); };
+ TrialSwap2(){ m = MothurOut::getInstance(); };
~TrialSwap2(){};
double calc_pvalue_lessthan (vector<double>, double);
double calc_pvalue_greaterthan (vector<double>, double);
- int swap_checkerboards (vector<vector<int> > &);
- int calc_combo (vector<vector<int> > &);
- double calc_vratio (vector<int>, vector<int>);
- int calc_checker (vector<vector<int> > &,vector<int>);
- double calc_c_score (vector<vector<int> > &,vector<int>);
+ int swap_checkerboards (vector<vector<int> > &, int, int);
+ int calc_combo (int, int, vector<vector<int> > &);
+ double calc_vratio (int, int, vector<int>, vector<int>);
+ int calc_checker (vector<vector<int> > &, vector<int>, int, int);
+ double calc_c_score (vector<vector<int> > &, vector<int>, int, int);
+ double get_zscore (double, double, double);
+ double getSD (int, vector<double>, double);
- int sim1 (vector<vector<int> > &);
- void sim2(vector<vector<int> >&);
- int sim2plus(vector<int>, vector<vector<int> > &);
- void sim3(vector<vector<int> > &);
- int sim4(vector<int>, vector<int>, vector<vector<int> > &);
- int sim5(vector<int>, vector<int>, vector<vector<int> > &);
- int sim6(vector<int>, vector<vector<int> > &);
- int sim7(vector<int>, vector<vector<int> > &);
- int sim8(vector<int>, vector<int>, vector<vector<int> > &);
- int transpose_matrix (vector<vector<int> > &, vector<vector<int> > &);
- int update_row_col_totals(vector<vector<int> > &, vector<int>&, vector<int>&);
-
private:
MothurOut* m;
int print_matrix(vector<vector<int> > &, int, int);
-
+
};
+#endif
+
-#endif
\ No newline at end of file