BF/FO: fix mixing tabs and spaces

[neurodebian.git] / tools / nd-vmsetupwizard

diff --git a/tools/nd-vmsetupwizard b/tools/nd-vmsetupwizard
index abc58211a2f490435ebd7522adddd612ddbb2cb7..8d69df4b38c3da75afb345ade40b7363371c9428 100755 (executable)
--- a/tools/nd-vmsetupwizard
+++ b/tools/nd-vmsetupwizard
@@ -49,7 +49,7 @@ then
 
        if [ -e "$popconf" ] ; then
        # just reconfigure so user could get a chance to participate
-               sudo DEBIAN_FRONTEND=gnome dpkg-reconfigure popularity-contest  
+               sudo DEBIAN_FRONTEND=gnome dpkg-reconfigure popularity-contest
        else
        # install, but do not fail if something goes wrong
                nd-autoinstall popularity-contest /etc/popularity-contest.conf || true
@@ -88,9 +88,25 @@ EOT
        sudo bash -c "mkdir -p $cfg_dir && touch $success_flag"
 fi
 
+if ! grep -q '/etc/fsl/fsl.sh' $HOME/.profile && \
+   zenity --question $icon_opt --title="FSL/AFNI Environments" \
+--text="Packages, such as AFNI and FSL, provide large collections of command line tools which are available from their private directories, and require custom environment variables to be set for proper functioning.  Usually you need to source /etc/fsl/fsl.sh or /etc/afni/afni.sh in your environments.
+
+Do you want to get those files, if available, sourced automatically for your environment?
+"; then
+   for t in fsl afni cmtk freesurfer; do
+       cf="/etc/$t/$t.sh"
+       grep -q -e "$cf" $HOME/.profile || \
+               echo "[ -e \"$cf\" ] && . $cf" >> $HOME/.profile
+   done
+fi
+
 # create symlink to shared folder into homedir
-[ ! -e $HOME/host ] && ln -s /mnt/host $HOME/host
+[ ! -e $HOME/host ] && ln -s /media/sf_host $HOME/host
 
+# TODO: add PyMVPA:
+#   FALSE "PyMVPA" "python-mvpa2,python-mvpa2-doc,python-mvpa2-tutorial-data" \
+# needs -doc and -tutorial-data package
 packages=$(zenity --list $icon_opt --checklist --column="Install" --column="Description" \
           --column="Package Name" --print-column=3 --hide-column=3 --hide-header \
           --separator=' ' --text="Please select any additional component that shall be installed.
@@ -102,7 +118,7 @@ FALSE "Emacs" "emacs" \
 FALSE "GNU Image Manipulation Program (Gimp)" "gimp" \
 FALSE "Octave" "octave,qtoctave" \
 FALSE "OpenOffice.org" "openoffice.org" \
-FALSE "Scientific Python" "ipython,python-numpy,python-matplotlib" \
+FALSE "Scientific Python" "ipython,python-scipy,python-matplotlib" \
 FALSE "TeX Live" "texlive" \
 FALSE "Adobe Flash browser plugin" "flashplugin-nonfree" \
 FALSE "Sun Java browser plugin" "sun-java6-plugin" \