if [ -e "$popconf" ] ; then
# just reconfigure so user could get a chance to participate
- sudo DEBIAN_FRONTEND=gnome dpkg-reconfigure popularity-contest
+ sudo DEBIAN_FRONTEND=gnome dpkg-reconfigure popularity-contest
else
# install, but do not fail if something goes wrong
nd-autoinstall popularity-contest /etc/popularity-contest.conf || true
sudo bash -c "mkdir -p $cfg_dir && touch $success_flag"
fi
-# create symlink to shared folder into homedir
-[ ! -e $HOME/host ] && ln -s /mnt/host $HOME/host
+if ! grep -q '/etc/fsl/fsl.sh' $HOME/.profile && \
+ zenity --question $icon_opt --title="FSL/AFNI Environments" \
+--text="Packages, such as AFNI and FSL, provide large collections of command line tools which are available from their private directories, and require custom environment variables to be set for proper functioning. Usually you need to source /etc/fsl/fsl.sh or /etc/afni/afni.sh in your environments.
-packages=$(zenity --list $icon_opt --checklist --column="Install" --column="Description" \
+Do you want to get those files, if available, sourced automatically for your environment?
+"; then
+ for t in fsl afni cmtk freesurfer; do
+ cf="/etc/$t/$t.sh"
+ grep -q -e "$cf" $HOME/.profile || \
+ echo "[ -e \"$cf\" ] && . $cf" >> $HOME/.profile
+ done
+fi
+
+# create symlink to shared folder into homedir
+# note: -e check would exit 1 if link is broken
+# ln -f is used for further robustness
+[ ! -L $HOME/host ] && ln -sf /media/sf_host $HOME/host
+
+# TODO: add PyMVPA:
+# FALSE "PyMVPA" "python-mvpa2,python-mvpa2-doc,python-mvpa2-tutorial-data" \
+# needs -doc and -tutorial-data package
+packages=$(zenity --height 450 --list $icon_opt --checklist --column="Install" --column="Description" \
--column="Package Name" --print-column=3 --hide-column=3 --hide-header \
--separator=' ' --text="Please select any additional component that shall be installed.
on the system. No installed packages will be reinstalled or removed, only
additional components will be installed." \
FALSE "Emacs" "emacs" \
-FALSE "GNU Image Manipulation Program (Gimp)" "gimp" \
+FALSE "Graphics (e.g. GIMP, Inscape)" "gimp,inkscape,svgtune,xzgv,vym" \
+FALSE "Octave" "octave,qtoctave" \
FALSE "OpenOffice.org" "openoffice.org" \
-FALSE "Scientific Python" "ipython,python-numpy,python-matplotlib" \
+FALSE "PyMVPA Tutorial" "ipython01x,python-mvpa2,python-mvpa2-doc,python-mvpa2-tutorialdata,spyder" \
+FALSE "Python: Electrophysiology & Modeling" "python-brian,python-pynn,python-pyentropy,stimfit" \
+FALSE "Python: Neuroimaging" "ipython01x,spyder,nipy-suite,python-mvpa2" \
+FALSE "Python: Scientific stack" "ipython01x,spyder,python-matplotlib,python-pandas,python-sympy" \
+FALSE "R" "r-recommended" \
FALSE "TeX Live" "texlive" \
FALSE "Adobe Flash browser plugin" "flashplugin-nonfree" \
FALSE "Sun Java browser plugin" "sun-java6-plugin" \