Merge remote-tracking branch 'neurohydra/master'

[neurodebian.git] / tools / nd-vmsetupwizard

diff --git a/tools/nd-vmsetupwizard b/tools/nd-vmsetupwizard
index a5a027562397a3e07c4676791d027efda17cd186..2882af860bf2c75e4b84399992b004d0f8dc3646 100755 (executable)
--- a/tools/nd-vmsetupwizard
+++ b/tools/nd-vmsetupwizard
@@ -88,6 +88,19 @@ EOT
        sudo bash -c "mkdir -p $cfg_dir && touch $success_flag"
 fi
 
+if ! grep -q '/etc/fsl/fsl.sh' $HOME/.profile && \
+   zenity --question $icon_opt --title="FSL/AFNI Environments" \
+--text="Packages, such as AFNI and FSL, provide large collections of command line tools which are available from their private directories, and require custom environment variables to be set for proper functioning.  Usually you need to source /etc/fsl/fsl.sh or /etc/afni/afni.sh in your environments.
+
+Do you want to get those files, if available, sourced automatically for your environment?
+"; then
+   for t in fsl afni; do
+       cf="/etc/$t/$t.sh"
+       grep -q -e "$cf" $HOME/.profile || \
+               echo "[ -e \"$cf\" ] && . $cf" >> $HOME/.profile
+   done
+fi
+
 # create symlink to shared folder into homedir
 [ ! -e $HOME/host ] && ln -s /mnt/host $HOME/host
 
@@ -100,8 +113,9 @@ on the system. No installed packages will be reinstalled or removed, only
 additional components will be installed." \
 FALSE "Emacs" "emacs" \
 FALSE "GNU Image Manipulation Program (Gimp)" "gimp" \
+FALSE "Octave" "octave,qtoctave" \
 FALSE "OpenOffice.org" "openoffice.org" \
-FALSE "Scientific Python" "ipython,python-numpy,python-matplotlib" \
+FALSE "Scientific Python" "ipython,python-scipy,python-matplotlib" \
 FALSE "TeX Live" "texlive" \
 FALSE "Adobe Flash browser plugin" "flashplugin-nonfree" \
 FALSE "Sun Java browser plugin" "sun-java6-plugin" \