#!/usr/bin/python
-from mvpa.misc.plot.base import plot_bars
from glob import glob
try:
from json import load as jload
'pypi': 'PyPi',
'pythonbundles': 'Python bundles',
'sourceforge': 'Sourceforge',
- 'other': 'Other resource'
+ 'otherres': 'Other resource'
}
# software categories
sw_categories = {
'bci': 'Brain-computer interface',
'acq': 'Hardware interface/Data acquisition',
'rt': 'Real-time solutions',
- 'psychophys': 'Psychophysics/Experiment control'
+ 'psychphys': 'Psychophysics/Experiment control'
}
# some meaningful groups of OSes
debian_family = ["debian", "ubuntu", "biolinux"]
suse_family = ["suse", "slel"]
other_linux_family = ["gentoo", "mandriva", "arch", "slackware", "otherlinux"]
-other_family = ["starbsd", "unix", "qnx", "beos", "solaris", "other"]
+other_family = ["starbsd", "unix", "qnx", "beos", "solaris", "other", "dontknow"]
os_cat_names = {
'win': 'Windows',
srcs = [DB.os_dict, os_cat_names, DB.sw_dict, sw_categories,
resource_categories, time_categories,
DB.datamod_dict, DB.position_dict, DB.employer_dict,
- DB.vm_dict]
+ DB.vm_dict, DB.ratings_dict]
for src in srcs:
if id in src:
return src[id]
pl.barh(x, stat, left=bottoms, color=os_colors[i],
label=db.get_nice_name(os), height=0.8)
bottoms += stat
- pl.legend(loc='lower left')
+ pl.legend(loc='center left')
pl.yticks(x + 0.4, env_names[::-1])
pl.ylim(-0.25, len(envs))
+ pl.xlim(0,1)
pl.title("Operating system preference by environment")
pl.xlabel("Fraction of submissions")
pl.subplots_adjust(left=0.15, right=0.97)
x = np.arange(len(envs))
bottoms = np.zeros(len(envs))
for i, t in enumerate(time_order):
- stat = [env_stats[e][t] for e in envs]
+ stat = [env_stats[e][t] for e in envs[::-1]]
pl.barh(x, stat, left=bottoms, color=time_colors[i],
label=db.get_nice_name(t), height=.6)
bottoms += stat
- pl.legend(loc='center left')
- pl.yticks(x + 0.2, env_names)
+ pl.legend(loc='lower left')
+ pl.yticks(x + 0.2, env_names[::-1])
pl.ylim(-0.4, len(envs))
pl.title("Research activity time by environment")
pl.xlabel("Fraction of submissions")
multiple=False):
counts = db.get_counts(key)
pl.figure(figsize=(6.4, (len(counts)-2) * 0.4 + 2))
- tmargin = .8/len(counts)
+ if not len(counts): tmargin = 0.4
+ else: tmargin = .8/len(counts)
if tmargin > 0.3: tmargin = 0.3
pl.subplots_adjust(left=0.03, right=0.97, top=1-tmargin, bottom=tmargin)
pl.title(title)
pl.yticks(x + 0.5, ['' for s in stats])
text_offset = pl.gca().get_xlim()[1] / 30.
for i, s in enumerate(stats[::-1]):
- pl.text(text_offset, i+.5, db.get_nice_name(s[0]),
+ pl.text(text_offset, i+.5, db.get_nice_name(s[0]) + " [%d]" % (s[1],),
horizontalalignment='left',
verticalalignment='center',
bbox=dict(facecolor='white', alpha=0.8, edgecolor='white'))
mkpic_submissions_per_key(
db, destdir, 'sw_%s' % typ,
title="Software popularity: %s" % db.get_nice_name(typ),
- sortby='name')
+ sortby='count')
def mkpic_rating_by_os(db, env, items, destdir, title):
+ from mvpa.misc.plot.base import plot_bars
+
pl.figure(figsize=(6.4, 4.8))
for i, os in enumerate(os_order):
ratings = [db.select_match(env,
pl.legend(loc='lower right')
pl.savefig('%s/ratings_%s.png' % (destdir, env), format='png', dpi=80)
-def mkpic_rating_by_os_hor(db, env, items, destdir, title):
- envs = ['pers_time', 'man_time', 'virt_time']
- env_names = ['Personal', 'Managed', 'Virtual']
- env_stats = {}
- for env in envs:
- counts = dict(zip(time_order, [0] * len(time_order)))
- counts.update(db.get_counts(env))
- total_count = np.sum(counts.values())
- for c in counts:
- counts[c] = float(counts[c]) / total_count
- env_stats[env] = counts
- # make stacked barplot
- pl.figure(figsize=(7.5, 4))
- x = np.arange(len(envs))
- bottoms = np.zeros(len(envs))
- for i, t in enumerate(time_order):
- stat = [env_stats[e][t] for e in envs]
- #import pydb; pydb.debugger()
- pl.barh(x, stat, left=bottoms, color=time_colors[i],
- label=db.get_nice_name(t), height=.6, alpha=0.25 + i/4.0)
- bottoms += stat
- pl.legend(loc='center left')
- pl.yticks(x + 0.2, env_names)
- pl.ylim(-0.4, len(envs))
- pl.title("Research activity time by environment")
- pl.xlabel("Fraction of submissions")
- pl.subplots_adjust(right=0.97)
- pl.savefig('%s/time_by_env.png' % destdir, format='png', dpi=80)
+def mkpic_rating_by_os_hor_joined(db, env, items, destdir, title,
+ intro_sentence="I agree with the statements"):
+ per_os_width = 10
+ max_rating = 4
+ #pl.figure(figsize=(6.4, 4.8))
+ nos = len(os_order)
+ rst = open('figures/ratings_%s.rst' % env, 'w')
+ rst.write("""
+
+%s
+%s
+
+%s
+
+.. raw:: html
+
+ <table>
+ """ % (title, '=' * len(title), intro_sentence))
+ for k, it in enumerate(items):
+ if k == 0:
+ pl.figure(figsize=(3.2, 0.75))
+ else:
+ pl.figure(figsize=(3.2, 0.5))
+ it_nice = db.get_nice_name(it)#.lstrip('.').lstrip(' ')
+ it_nice = it_nice[0].upper() + it_nice[1:]
+ for i, os in enumerate(os_order):
+ ratings = np.array(db.select_match(env,
+ os_family[os]).get_not_none('%s' % (it,))[0])
+ # assume that we have 4 grades from 0 to 3
+ if len(ratings):
+ assert(max(ratings) < max_rating)
+ # Complement with errorbar
+ if len(ratings):
+ meanstat = np.mean(ratings)
+ meanstat_point = per_os_width * (float(meanstat))/(max_rating-1)
+ # standard error of estimate
+ errstat = len(ratings) > 1 and np.std(ratings)/np.sqrt(len(ratings)-1) or 0
+
+ if True:
+ # Beautiful piece not yet appreciated by the audience
+ total = len(ratings)
+ bottom = 0
+ for r in range(max_rating):
+ stat = np.sum(ratings == r) * meanstat_point / float(total)
+ #print r, it, os, stat, total
+ #if it == "pers_r8" and os == "linux" and r == 3:
+ # import pydb; pydb.debugger()
+ kwargs = dict(label=None)
+ if stat:
+ pl.barh(1.0/nos * (nos - 1 - i), stat, left=bottom, color=os_colors[i],
+ height=.25, alpha=0.25 + r/float(max_rating),
+ label=None,
+ edgecolor=os_colors[i])
+ bottom += stat
+ else:
+ pl.barh(1.0/nos * (nos - 1 - i), meanstat_point, left=0,
+ color=os_colors[i], height=.25, alpha=1.0, label=None)
+ pl.errorbar([meanstat_point],
+ [1.0/nos * (nos - 0.5 - i)],
+ xerr=[errstat], fmt='o', color=os_colors[i], ecolor='k')
+ pl.xlim((0, per_os_width))
+ if k == 0:
+ pl.text(0, 1.1, "Disagree", horizontalalignment='left')
+ pl.text(per_os_width, 1.1, "Agree", horizontalalignment='right')
+ pl.ylim((0, 1.5))
+ else:
+ pl.ylim((0, 1))
+ pl.axis('off')
+ pl.subplots_adjust(left=0.00, right=1., bottom=0.0, top=1,
+ wspace=0.05, hspace=0.05)
+ fname = '%s/ratings_%s_%s.png' % (destdir, env, it)
+ pl.savefig(fname, format='png', dpi=80)
+ pl.close()
+ oddrow_s = k % 2 == 0 and ' class="oddrow"' or ''
+ rst.write("""
+ <tr%(oddrow_s)s>
+ <td>%(it_nice)s</td>
+ <td><img border="0" alt="%(fname)s" src="%(fname)s" /></td> </tr>"""
+ % (locals()))
+
+ rst.write("""
+ </table>
+
+ """)
+ rst.close()
+ return
def main(srcdir, destdir):
os.makedirs(destdir)
mkpic_submissions_per_key(
- db, destdir, 'virt_prod', sortby='name',
- title='Virtualization product popularity\n(multiple choices per submission possible)')
+ db, destdir, 'virt_prod', sortby='count',
+ title='Virtualization product popularity')
mkpic_submissions_per_key(
db, destdir, 'bg_datamod', sortby='count',
- title='Submissions per data modality\n(multiple choices per submission possible)')
+ title='Submissions per data modality')
mkpic_submissions_per_key(
db, destdir, 'bg_position', title='Submissions per position', sortby='count')
for pic in [mkpic_os_per_env, mkpic_software, mkpic_time_per_env]:
pic(db, destdir)
- mkpic_rating_by_os(db, 'pers_os', ['pers_r%i' % i for i in range(1, 9)], destdir,
- "Ratings: Personal environment")
- mkpic_rating_by_os(db, 'man_os', ['man_r%i' % i for i in range(1, 5)], destdir,
- "Ratings: Managed environment")
- mkpic_rating_by_os(db, 'virt_host_os', ['virt_r%i' % i for i in range(1, 4)], destdir,
- "Ratings: Virtual environment (by host OS)")
+ mkpic_rating_by_os_hor_joined(db, 'pers_os', ['pers_r%i' % i for i in range(1, 9)], destdir,
+ "Personal environment", "I prefer this particular scientific software environment because ...")
+ mkpic_rating_by_os_hor_joined(db, 'man_os', ['man_r%i' % i for i in range(1, 5)], destdir,
+ "Managed environment")
+ mkpic_rating_by_os_hor_joined(db, 'virt_host_os', ['virt_r%i' % i for i in range(1, 4)], destdir,
+ "Virtual environment (by host OS)")
+
# submission stats: this is RST
statsfile = open('%s/stats.txt' % destdir, 'w')
statsfile.write('::\n\n Number of submissions: %i\n' % len(db))
projects / neurodebian.git / blobdiff